Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46566g00001 ATGTCTCTTGATCAGACAAAGGATTCTGTTATGAATTCTATCACCGAAGGGGCTTGCGCATACTGGGCCAAGCCATTGGATGAAAACCAATTCAAGAACATGTGGCAACATGTTGTTCGAAACGCTTTAAGCCAACAAAGTGAGCCATCTGAATTTCTTCAAACCATGGAGGTTAAAGGCGGCAGTAAAAAACGAGTAAGAGAAGAACATGTTGATGTCCCAAAACAACCTCTTCCAAAGAAAAGCCGTTTGTCATGGACACCCGACTTGCACGGACAATTTATGTCGGCTGTGAATCAACTCGGGGTTAATAATGCAGTGCCGAAAGAAATTCTTAAACGGATGAATTTTCCTGGTTTGACATTAGGGCATGTAGCTAGCCATTTACAGAAATATAGAAAGTATCTAAAAGGCGGAATCAGAAAATCAAAGTTGAGTGGGGGATCCGATTTTCAAGGTCATGACGAAATGCATACACGACAACAACAATGGACTGATATTGGCGAATCCGACATTTTTTTTTACTTGTCCGACTTGTTCCCCGATCTTGTCG 553 0.4177 MSLDQTKDSVMNSITEGACAYWAKPLDENQFKNMWQHVVRNALSQQSEPSEFLQTMEVKGGSKKRVREEHVDVPKQPLPKKSRLSWTPDLHGQFMSAVNQLGVNNAVPKEILKRMNFPGLTLGHVASHLQKYRKYLKGGIRKSKLSGGSDFQGHDEMHTRQQQWTDIGESDIFFYLSDLFPDLV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46566g00001 184 SUPERFAMILY Homeodomain-like 79 137 IPR009057 -
Trme46566g00001 184 Gene3D - 78 138 - -
Trme46566g00001 184 MobiDBLite consensus disorder prediction 57 82 - -
Trme46566g00001 184 FunFam Two-component response regulator 78 138 - -
Trme46566g00001 184 Pfam Myb-like DNA-binding domain 83 133 IPR001005 -
Trme46566g00001 184 NCBIfam myb-like DNA-binding domain, SHAQKYF class 81 134 IPR006447 GO:0003677
Trme46566g00001 184 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 54 147 IPR044841 GO:0003700|GO:0006355
Trme46566g00001 184 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 137 IPR017930 -
Trme46566g00001 184 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46566g00001 Trme-Chr46566 34 834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46566g00001 1 161 Response Regulator Gene Family AT2G01760 36.126 1.35e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme46566g00001 Myb_DNA-binding 8.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46566g00001 - - tpra:123923208 248.44