Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46538g00001 ATGGAAGATAAGATGCAACATAACCCCCCTAACAACACTCCAACCCAACATGGTTCCGAGAAAACTGAACCGGTTAGGTCAAGATGGACACCAAAACCAGAACAAATTCTCATACTTGAATCCATCTTCAATAGTGGTATGGTTAATCCACCAAAAGAAGAAACTATCAAAATAAGAAAACTTCTTGAAAAATTTGGCAACGTCGGCGACGCGAACGTTTTTTACTGGTTTCAAAACCGCCGGTCTAGATCTCGTCGCCGACAACGCCAGATGCAACAAGCAACACTTGATCAACAAAAAAATCAGATGTTGATGATGCAACAACCTCAACAAGTTGTTGTTAATGATGGTGCAAGTGCAACTGCAAGTGCAATGAATAATTCATGTGATATGGTTCAAACTAATTATCCAATAATGGGTGGTTTTGGTGGTGGTTCTTCTTGTTTGAATGATTCTTCTGGTTCTTCTTCTTCTTCATCATGTGGTGGTGTTCTTAGTGGTCAACAAGGAATGGATGGTTTCTTTTCAGTTTCTTCTCAAATGGGTTTTCTTGGAATTGATCAAACTTTGACTCCATCTTCACTTTTGTGCCCTCCTTTTTCTTCCAATTTGAACTATCACTCTG 625 0.3936 MEDKMQHNPPNNTPTQHGSEKTEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQKNQMLMMQQPQQVVVNDGASATASAMNNSCDMVQTNYPIMGGFGGGSSCLNDSSGSSSSSSCGGVLSGQQGMDGFFSVSSQMGFLGIDQTLTPSSLLCPPFSSNLNYHS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46538g00001 208 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 207 IPR044558 GO:0003700|GO:0048830
Trme46538g00001 208 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Trme46538g00001 208 SMART HOX_1 24 91 IPR001356 GO:0003677
Trme46538g00001 208 MobiDBLite consensus disorder prediction 1 29 - -
Trme46538g00001 208 SUPERFAMILY Homeodomain-like 19 93 IPR009057 -
Trme46538g00001 208 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Trme46538g00001 208 Gene3D - 24 95 - -
Trme46538g00001 208 FunFam WUSCHEL-related homeobox 11 26 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46538g00001 Trme-Chr46538 332 956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46538g00001 12 79 Wox Gene Family AT3G03660 72.727 1.09e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trme46538g00001 Homeodomain 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46538g00001 - - rcu:8282397 171.014