Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46518g00001 ATGACCGGTGGAAGAGGGACACCTGGTTATGCCGCACCTGAGCTTTGGATGCCGTTTCCTGTAACTCACAAGTGTGATGTTTANNNNNNNGGCATCTTATTATTCGAAATCATAGGTAGGAGAAGAAACCATGATATAAACCTTTCCGAAAGTCAAGAATGGTTTCCGTTATGGGTTTGGAAAAAATTTGATGATGAAAAAGTGGAGGAGTTGGTAATGGCTTGTGGGATAGAGAAGCAAAATATAGAGAATGTAGAGAGAATGGTTAAGGTAGCATTGTCATGTGTTCAATATAGGCCAGAATCAAGACCTAAAATGAGTATTGTGGTACAAATGTTGGAAAGTTTAGTTGAAATTCCAAAACCTTTGAATCCATTTCAACACATGATTGATAGCACTTTCCCTGCTTTTTCAATTCCAAAATCACATATCAACACTGATACAAGTAATGGTTCTATCACTGATTCTTCTATAATGGTAATCGAAGATAGCGTCGAAGGTGTTACTCCTATTGTGACATCTATCTAA 528 0.3712 MTGGRGTPGYAAPELWMPFPVTHKCDVXXXGILLFEIIGRRRNHDINLSESQEWFPLWVWKKFDDEKVEELVMACGIEKQNIENVERMVKVALSCVQYRPESRPKMSIVVQMLESLVEIPKPLNPFQHMIDSTFPAFSIPKSHINTDTSNGSITDSSIMVIEDSVEGVTPIVTSI 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46518g00001 175 Gene3D Transferase(Phosphotransferase) domain 1 1 129 - -
Trme46518g00001 175 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46518g00001 175 SUPERFAMILY Protein kinase-like (PK-like) 2 129 IPR011009 -
Trme46518g00001 175 PANTHER OS07G0415500 PROTEIN 5 125 - -
Trme46518g00001 175 Pfam Protein tyrosine and serine/threonine kinase 8 113 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46518g00001 Trme-Chr46518 217 744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46518g00001 6 158 Receptor kinase-like Gene Family AT1G56120 33.333 7.55e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Trme46518g00001 PK_Tyr_Ser-Thr 3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46518g00001 - - gmx:100819737 238.424