Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4644g00001 ATGGTGAAAAATGAGTGGGGCAATAGTATTTACCCACTAGTTCCCGGACATGAAGTTGCGGGTGAAGTAACTGAGGTAGGAAGCAAGGTAACAAAGTTCAAAGTTGGAGACAGGGTAGGTGTAGGGTGCATGGTTAATTCATGCAAGTCATGTCAAAGTTGTAGCGATGATCTCGAGAATTATTGTCCAAAGATAATTCTCACATATAGTGTAAAAAATGTTGATGGAACAATCACATACGGAGGCTACTCTGACAGCATGGTTTGCGATGAAAACTTCGTGATCCGTATTCCTGATGCCTTATCACTTGAGGCCGCTGCTCCTCTTCTTTGTGCCGGGATCACAGTGTATAGCCCTTTAAAATATTTTGGACTCGATAAACCTGGTTTGCATCTTGGTGTGGTTGGTCTTGGTGGATTAGGTCATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCGAATGTAACTGTGATAAGTACTTCTCCTAACAAAAAGAAAGAAGCTCTTGAACACTTAGGAGCTGACTCATTCGTGGTTAGTCGCGAACAAGATCAGATGCAGGCTTTAATGGGGACTTTTGATGGTATCATAGACAGTGTTTCAGCACAACATTCACTAGTGCCTTTGCTTGCTCTAGTGAAGAATCATGGTAAACTTGTTATGGTTGGAGCACCAGAGAAGCCTTTAGAGGTTCCAGCATTTTCTATTATTGGAGGGAGAAAAACAGTTAGTGGGAGTATGATTGGAGGAATAAAAGAGACACAAGAAATGATTGATTTTGCTGCCAAACATGGTGTTAAACCTGATATTGAGATTATTGCAGTAGATTATGTGAATACTGCAATGGAGCGTTTACTCAAAGCTGATGTCAAATATCGATTTGTTATTGACATTGGAAACACATTGAAGGCAAGTTCTTAA 921 0.4072 MVKNEWGNSIYPLVPGHEVAGEVTEVGSKVTKFKVGDRVGVGCMVNSCKSCQSCSDDLENYCPKIILTYSVKNVDGTITYGGYSDSMVCDENFVIRIPDALSLEAAAPLLCAGITVYSPLKYFGLDKPGLHLGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKKKEALEHLGADSFVVSREQDQMQALMGTFDGIIDSVSAQHSLVPLLALVKNHGKLVMVGAPEKPLEVPAFSIIGGRKTVSGSMIGGIKETQEMIDFAAKHGVKPDIEIIAVDYVNTAMERLLKADVKYRFVIDIGNTLKASS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4644g00001 306 CDD CAD1 1 297 IPR047109 GO:0016616
Trme4644g00001 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 267 IPR036291 -
Trme4644g00001 306 FunFam Putative cinnamyl alcohol dehydrogenase 6 269 298 - -
Trme4644g00001 306 SUPERFAMILY GroES-like 2 129 IPR011032 -
Trme4644g00001 306 Gene3D - 112 268 - -
Trme4644g00001 306 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 16 30 IPR002328 GO:0008270|GO:0016491
Trme4644g00001 306 PANTHER ALDEHYDE REDUCTASE 1 301 IPR047109 GO:0016616
Trme4644g00001 306 FunFam Cinnamyl alcohol dehydrogenase 112 268 - -
Trme4644g00001 306 SMART PKS_ER_names_mod 7 296 IPR020843 GO:0016491
Trme4644g00001 306 Gene3D - 1 298 - -
Trme4644g00001 306 Pfam Zinc-binding dehydrogenase 139 262 IPR013149 -
Trme4644g00001 306 Pfam Alcohol dehydrogenase GroES-like domain 5 96 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4644g00001 Trme-Chr4644 563 2133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4644g00001 1 305 Monolignol Biosynthesis Gene Families AT4G37990 71.148 1.04e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4644g00001 K23232 - gmx:100809071 507.294