Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46410g00001 GAAGTTGCTCCTGATAACGAATTTGAGAAGCGAATAAGGCCTGAAGTTATACCAGCAAATGAGATTGATGTCACATTCGCTGATATTGGTGCCTTAGAAGAGACAAAAGAATCCCTTCAAGAGCTAGTAATGCTTCCTCTCCGAAGGCCGGATCTTTTCACCGGAGGACTTCTAAAGCCATGCAGAGGAATATTGCTATTTGGACCTCCTGGAACTGGGAAGACAATGCTAGCAAAGGCCATTGCAAAAGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTTACACTTGCAGCCAAAGTCTCTCCAACTATTATATTTGTCGATGAGGTTGATAGTATGCTTGGACAACGAACAAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGTCTCATTGGGATGGGCTCACGACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACCTGGATGAAGCTATTATAAGGCGATTTGAAAGGAGGTACCTCAATTAG 582 0.4278 EVAPDNEFEKRIRPEVIPANEIDVTFADIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRYLN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46410g00001 193 SMART AAA_5 60 193 IPR003593 GO:0016887
Trme46410g00001 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 187 IPR027417 -
Trme46410g00001 193 ProSitePatterns AAA-protein family signature. 167 186 IPR003960 GO:0005524|GO:0016887
Trme46410g00001 193 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 191 - -
Trme46410g00001 193 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 23 193 - -
Trme46410g00001 193 Pfam ATPase family associated with various cellular activities (AAA) 64 191 IPR003959 GO:0005524|GO:0016887
Trme46410g00001 193 Gene3D - 4 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46410g00001 Trme-Chr46410 169 750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46410g00001 24 189 Calmodulin-binding Proteins AT3G56690 39.645 1.78e-32 121