Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46385g00001 CTACTAAGGAACCGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGACTTGGAAACAAGAGTCAATGACTTAGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCCACTTTGCAAAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACAACAGCAAGCAGAAGAGGGACCAACGGTGGTGCCAACAATGCTGAATGA 219 0.411 LLRNRVSAQQARERKKAYLSDLETRVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGTNGGANNAE 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46385g00001 72 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 67 IPR044280 GO:0000981|GO:0045944
Trme46385g00001 72 Coils Coil 12 60 - -
Trme46385g00001 72 SMART brlzneu 2 56 IPR004827 GO:0003700|GO:0006355
Trme46385g00001 72 CDD bZIP_HY5-like 1 48 - -
Trme46385g00001 72 FunFam Transcription factor HY5 15 56 - -
Trme46385g00001 72 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 57 IPR004827 GO:0003700|GO:0006355
Trme46385g00001 72 Pfam bZIP transcription factor 2 54 IPR004827 GO:0003700|GO:0006355
Trme46385g00001 72 Gene3D Single helix bin 15 56 - -
Trme46385g00001 72 SUPERFAMILY Leucine zipper domain 2 54 IPR046347 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46385g00001 1 53 bZIP Transcription Factor Family AT5G11260 84.906 3.67e-25 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme46385g00001 bZIP_1 5.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46385g00001 K16241 - cam:101493489 125.946