Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46343g00001 ATGAGAGTGAAGATGAGGGATGCAGAAGCAGTAGAACGATGGATGTCTCGCCGTATGTTACCTGATGACTTGAAGCAAAGAATTAGAAGTTATGAACTATACAAATGGCAAGAAAATAGAGGTGTTGAAGAAGAGACTTTACTTCGCAAATTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATCTTTGCTTAGATTTAGTTAAAAGAGTGCCAATGATTGAGAAAATGGATGAGCAATTTTTGGAAGCAATGTGTGATAGAATGAAACCTGTTCTGTATGCAGAGAAGAGTTGCATTGTCCGTGAAAAAGAGCCGATTGATGAAATGATTTTCATTATGCGTGGAAAAGTCACCATATCAACAAATGACTTTCTAATGCCCGGTGATTTTTGTGGAGAAGAACTTTTAATATGGGCTTTGGATCCACGCTCCACCTCAAATCCACCAACTTCAACTATAACAGTAGAAACTATATCAGAAGTTGAAGCATTTGCAGTCATGGCTGATGATTTGAAGTTTGTTATTTCCAAATTTAGACATTTTATCAACAGCAGACAACTTGAACTTAAACACACTTTCAGTCAAGTGCTGCACAAAATAGGAAACAAGTTGTAA 618 0.3706 MRVKMRDAEAVERWMSRRMLPDDLKQRIRSYELYKWQENRGVEEETLLRKFPKDLRRDIKRHLCLDLVKRVPMIEKMDEQFLEAMCDRMKPVLYAEKSCIVREKEPIDEMIFIMRGKVTISTNDFLMPGDFCGEELLIWALDPRSTSNPPTSTITVETISEVEAFAVMADDLKFVISKFRHFINSRQLELKHTFSQVLHKIGNKL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46343g00001 205 SUPERFAMILY cAMP-binding domain-like 9 182 IPR018490 -
Trme46343g00001 205 Gene3D Jelly Rolls 71 181 IPR014710 -
Trme46343g00001 205 ProSiteProfiles cAMP/cGMP binding motif profile. 73 147 IPR000595 -
Trme46343g00001 205 CDD CAP_ED 73 182 IPR000595 -
Trme46343g00001 205 SMART cnmp_10 73 194 IPR000595 -
Trme46343g00001 205 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 197 - -
Trme46343g00001 205 Gene3D Helix hairpin bin 2 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46343g00001 Trme-Chr46343 56 840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46343g00001 1 194 Ion Channels AT5G53130 64.216 4.06e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46343g00001 K05391 - gmx:100816236 272.322