Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46261g00001 ATGGAGTTGGCTTTAAAAATTGCGAACAAGATAAGCAAGAACGAACGCTTTTCTGTGTATATAGTTATACCAATGTGGCCAGAAGGAGTTCCAACTAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAAGGACAAACAATGTCTATGATGTACAAGATTATTGCAGATGCACTTGCGAAAGCAGGTCTCTCTGAATGTTACCATCCACAAGATTATCTCAATTTTTACTGCCTTGGCAAAAGAGAACCTCAAGCGAACGAAAGTGCGTCACCAATAAATCAATCATCTGAAAACCGCGCCTTGGTAGCAGTTAAAAAATACAGGCGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGGATATGTAATCATTGGATCAGCAAATATTAATCAGAGATCATTAGATGGATCAAGAGACACAGAAATAGCCATGGGGGCTTATCAACCAAAACATACATTGCAACAAAAGAACACTCTTCCACGCGGCCAG 501 0.3932 MELALKIANKISKNERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALAKAGLSECYHPQDYLNFYCLGKREPQANESASPINQSSENRALVAVKKYRRFMIYVHAKGMIVDDGYVIIGSANINQRSLDGSRDTEIAMGAYQPKHTLQQKNTLPRGQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46261g00001 167 Gene3D Endonuclease Chain A 1 163 - -
Trme46261g00001 167 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 110 137 IPR001736 GO:0003824
Trme46261g00001 167 Pfam PLD-like domain 99 148 IPR025202 -
Trme46261g00001 167 SUPERFAMILY Phospholipase D/nuclease 3 146 - -
Trme46261g00001 167 SMART pld_4 110 137 IPR001736 GO:0003824
Trme46261g00001 167 PANTHER PHOSPHOLIPASE D 1 165 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46261g00001 Trme-Chr46261 8 652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46261g00001 1 167 Phospholipase D Gene Family (Wang group) AT4G00240 63.095 2.23e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46261g00001 K01115 - gmx:100779740 279.256