Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46254g00001 ATGCAGATTGGTGAAGGAACTTACAGCACTGTTTATAAGGCACGTGATTTGATAAACCAAAAGGTCGTTGCCTTGAAGCGGGTACGCTTTGATAATCTTGATCATGAGAGTGTCAAGTTCATGGCAAGAGAAATNNTTTTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCGCAGTCGTCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTGCAACAGCACCTGACATTAAGTTTTCAGAACCACAGATTAAATGCTACATGAATCAGCTTCTTAGTGGATTGGATCATTGCCATAGTCGTGGTATCCTCCACCGTGATATAAAGGGCTCAAATCTTCTCATCGACAATAATGGCATTTTAAAGATTGCAGATTTTGGTTTGGCAAATTTTTTTGATCCCGATCAAAGTGTTCCGTTGACCAGCCGGGTAGTAACTCTGTG 485 0.4062 MQIGEGTYSTVYKARDLINQKVVALKRVRFDNLDHESVKFMAREXXFLRRLDHPNVIKLEGLITSQSSRSLYLVFEYMEHDLTGLATAPDIKFSEPQIKCYMNQLLSGLDHCHSRGILHRDIKGSNLLIDNNGILKIADFGLANFFDPDQSVPLTSRVVTL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46254g00001 161 Gene3D Transferase(Phosphotransferase) domain 1 80 161 - -
Trme46254g00001 161 PANTHER CELL DIVISION PROTEIN KINASE 2 161 - -
Trme46254g00001 161 SUPERFAMILY Protein kinase-like (PK-like) 2 160 IPR011009 -
Trme46254g00001 161 Pfam Protein kinase domain 2 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46254g00001 161 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trme46254g00001 161 SMART serkin_6 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46254g00001 161 FunFam probable serine/threonine-protein kinase At1g54610 1 79 - -
Trme46254g00001 161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trme46254g00001 161 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46254g00001 161 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46254g00001 Trme-Chr46254 40 956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46254g00001 2 161 Core Cell Cycle Gene Families AT5G10270 50.857 2.98e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme46254g00001 Pkinase 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46254g00001 - K08819 gmx:100781209 281.952