Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46252g00001 ATTGTGACATTAGGTGCACGCCATCATGATTCTTCCTTCAACTATTTATCCTCTTCAAACTCTTCCAAGCACCCCTGGATCGGACCTGTCGGTAACCGTGTAATAACGGTTGATATTAACGGTGGAGGCCAGTTTCAATCTGTCCAAGACGCCGTCAATGCTGTCCCCGACAACAATATAATGAACGTTCTTATTCAAATAAGGGCCGGATGCTACAAGTATGAATTGATCAGCTAG 237 0.443 IVTLGARHHDSSFNYLSSSNSSKHPWIGPVGNRVITVDINGGGQFQSVQDAVNAVPDNNIMNVLIQIRAGCYKYELIS 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46252g00001 78 Gene3D - 31 78 IPR012334 -
Trme46252g00001 78 SUPERFAMILY Pectin lyase-like 30 73 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46252g00001 Trme-Chr46252 483 719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46252g00001 26 77 Carbohydrate Esterase AT5G47500 48.077 3.12e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46252g00001 - - cam:101501763 102.449