Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46136g00001 ATGAATATAATTTGTGGAACTGTAGGTGCACAGGAAGCCGCTGCTGAAAATGATGAGGATGGAGATATACGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAATCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGGCAAAAACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGAATTTGAATGGTGTTTCAGGATTCATTAAGCTTCAGACCTCCGATGCGAGACAGTGGCCTGTTCGATGCCTTTATAGAGGAGGCCGAGCCAAGTTAAGTCAAGGATGGTATGAATTTACAGTAGAGAACAATTTAGGGGAAGGTGATGTCTGCGTTTTCGAGCTGCTTAGAACCAGAGATGTWGTGCTGCAAGTTACTTTGTTTCGTGTAAAAGAGGATGAATCAGGGTTATTCAACCCTTCTATGCAGCCGACCCAAAATGTGAGCCATGCGAAACTGTTGAACCCTCACTTGCAGCACCGTGTTAGCTCAACTAAATCGGCTAAAGTTTAG 585 0.4274 MNIICGTVGAQEAAAENDEDGDIRYRFYESASARKRIVTAEERERAINEAKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTSDARQWPVRCLYRGGRAKLSQGWYEFTVENNLGEGDVCVFELLRTRDVVLQVTLFRVKEDESGLFNPSMQPTQNVSHAKLLNPHLQHRVSSTKSAKV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46136g00001 194 SUPERFAMILY DNA-binding pseudobarrel domain 53 154 IPR015300 -
Trme46136g00001 194 Gene3D - 37 157 IPR015300 -
Trme46136g00001 194 CDD B3_DNA 58 153 IPR003340 GO:0003677
Trme46136g00001 194 ProSiteProfiles B3 DNA-binding domain profile. 60 155 IPR003340 GO:0003677
Trme46136g00001 194 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 157 IPR044837 -
Trme46136g00001 194 Pfam B3 DNA binding domain 63 153 IPR003340 GO:0003677
Trme46136g00001 194 SMART B3_2 60 155 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46136g00001 Trme-Chr46136 4 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46136g00001 19 156 REM Transcription Factor Family AT1G49480 78.986 6.03e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme46136g00001 B3 2.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46136g00001 - - lja:Lj2g3v0044780.1 315.464