Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46135g00001 ATGAACGTTATATTAGGAACAGCAAGAGGATTGGCCTATCTTCACGAAGGTCTTGAACCTAAGGTTGTTCACCGAGATGTAAAATCAAGCAACATCCTCCTCGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCTGAGAATAGTTATGTCACGACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACGGGAATGCTTACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATGGTAGACCACAAGGAGAG 330 0.4303 MNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYGRPQGE 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46135g00001 110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trme46135g00001 110 FunFam Putative receptor-like serine/threonine-protein kinase 1 110 - -
Trme46135g00001 110 Pfam Protein kinase domain 3 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46135g00001 110 ProSiteProfiles Protein kinase domain profile. 1 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46135g00001 110 SUPERFAMILY Protein kinase-like (PK-like) 3 105 IPR011009 -
Trme46135g00001 110 PANTHER OS01G0323000 PROTEIN 1 110 - -
Trme46135g00001 110 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46135g00001 Trme-Chr46135 314 885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46135g00001 1 110 Trihelix Transcription Factor Family AT1G26150 60.909 8.32e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme46135g00001 Pkinase 1.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46135g00001 - - tpra:123889015 223.787