Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46100g00001 ATGAATAAAATCGAAGATAACAATACACTGGTCTTTATTGTCGATCTCCGTGCTGATAAAAAGAAAATTAAAGATGTTGTGAAGAAAATGTATGACATTCAGGCTAAGAAAGTGAACACTTTGATCAGGCCTGATGGTACTAAGAAAGCCTATGTCCGGTTAACTCCAGATTACGATGCATTGGATGTTGCCAACAAAATTGGTATCATCTAA 213 0.3568 MNKIEDNNTLVFIVDLRADKKKIKDVVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46100g00001 70 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 63 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme46100g00001 70 Gene3D - 1 70 IPR012677 -
Trme46100g00001 70 ProSitePatterns Ribosomal protein L23 signature. 48 63 IPR001014 GO:0019843
Trme46100g00001 70 FunFam 50S ribosomal protein L23 1 70 - -
Trme46100g00001 70 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 70 IPR013025 GO:0003735|GO:0005840|GO:0006412
Trme46100g00001 70 Pfam Ribosomal protein L23 3 53 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46100g00001 Trme-Chr46100 341 861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46100g00001 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 94.286 1.29e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46100g00001 K02893 - qsa:O6P43_000250 129.413