Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46092g00001 ATGGAAGGAGGAGGAGCTCCGCCTGCCGACACCGTGATGTCGGATGCAGCACCGGTTCCACAGCAGCAGATGGGGATCGAGAATATTCCTGCAACCCTTAGCCATGGTGGTAGGTTCATTCAATACAACATATTCGGTAACATGTTTGAAGTTACTGCTAAATACAAACCACCCATCATGCCAATCGGTAAAGGTGCTTATGGTATTGTTTGCTCTGCTCATAATTCTGAGACAAATGAACATGTTGCCATCAAGAAGATTGCAAATGCTTTTGATAACAAAATTGATGCCAAGAGGACTCTCCGTGAAATCAAGCTGCTTCGTCACATGGATCATGAAAACGTTAGTGAGTAA 354 0.4435 MEGGGAPPADTVMSDAAPVPQQQMGIENIPATLSHGGRFIQYNIFGNMFEVTAKYKPPIMPIGKGAYGIVCSAHNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVSE 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46092g00001 117 Gene3D Phosphorylase Kinase; domain 1 32 117 - -
Trme46092g00001 117 ProSiteProfiles Protein kinase domain profile. 56 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46092g00001 117 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 54 115 - -
Trme46092g00001 117 SUPERFAMILY Protein kinase-like (PK-like) 61 115 IPR011009 -
Trme46092g00001 117 ProSitePatterns Protein kinases ATP-binding region signature. 62 86 IPR017441 GO:0005524
Trme46092g00001 117 Pfam Protein kinase domain 61 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme46092g00001 117 FunFam Mitogen-activated protein kinase 41 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46092g00001 Trme-Chr46092 423 954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46092g00001 1 115 MAP Kinase Gene Family AT2G43790 82.787 1.82e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme46092g00001 Pkinase 1.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme46092g00001 K14512 - gmx:547616 218.009