Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46088g00001 ATGCCATTTTCATTGCGATGTGGAATTGTATTTTTTGGTTTGCCTAGTTATCTGCACAGGTCTCTAGGACAAGCGTCTCCAAGCTTAACTGCATTTGCTGCTGGACAAGCTGCCGCCGTTAAAATGTTTGAGACAATAAAAAGGCAGCCAAATATTGATGCTTATGACACTGCTGGTAGGCAGCTAGATGATATTTCTGGAGATATAGAACTTAAGGAAGTTTGCTTTAGTTATCCTTCAAGACCAAATGAAATGATATTCAATGCATTTTCTATTTCAATATCAAGTGGCACTACTGCGGCTTTCGTAGGGCAAAGTGGGAGTGGGAAATCGACAGTTATTAGTTTGATAGAGAGATTTTATGATCCACAGGGTGGTGAAATTCTCATTGACGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGGCAAAAAATAGGCCTAGGACTTGACACGATGGTTGGCGAGCATGGAGCTCAGCTTTCTGGCGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTAGATGAAGCAACAAGTGCCCTTGACGCAGAGTCTGAAAGAGTG 597 0.4154 MPFSLRCGIVFFGLPSYLHRSLGQASPSLTAFAAGQAAAVKMFETIKRQPNIDAYDTAGRQLDDISGDIELKEVCFSYPSRPNEMIFNAFSISISSGTTAAFVGQSGSGKSTVISLIERFYDPQGGEILIDGINLREFQLKWIRQKIGLGLDTMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46088g00001 199 Gene3D - 59 149 IPR027417 -
Trme46088g00001 199 Gene3D - 151 199 IPR027417 -
Trme46088g00001 199 Pfam ABC transporter 152 190 IPR003439 GO:0005524
Trme46088g00001 199 Gene3D ABC transporter type 1, transmembrane domain 21 58 IPR036640 GO:0005524|GO:0016020
Trme46088g00001 199 SMART AAA_5 96 198 IPR003593 GO:0016887
Trme46088g00001 199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 198 IPR027417 -
Trme46088g00001 199 ProSitePatterns ABC transporters family signature. 162 176 IPR017871 GO:0005524|GO:0016887
Trme46088g00001 199 Pfam ABC transporter 88 148 IPR003439 GO:0005524
Trme46088g00001 199 PANTHER ABC TRANSPORTER B FAMILY 19 149 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46088g00001 Trme-Chr46088 18 972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46088g00001 21 199 Calmodulin-binding Proteins AT2G36910 48.000 1.40e-57 193