Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46087g00001 ATGATTGGTCCTGATTGGCCTTATGGAGTTATTGGAACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCTCTTTTTGCACTCGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGAAACAACGCAACGGGAAGTTAAAAAAATTGTTTTCCTCTTCTGTGGAGGTGCAGTTATAACTGTCACAGTCCATGCCATTGAACATCTTTTTTTCGGAATCATGGGCGAGCGACTTACCCTTCGTGTGCGAGAAAAGATGTTTACCGCTATTTTGAAGAATGAAATTGGATGGTTTGATGAAACAACCAACACAAGTTCTATGCTTTCATCGCGTTTAGAGTCCGACGCAACTTTAATGCGAACAATAGTTGTTGATCGCTCGACGATTCTGTTACAGAATGTTGGTCTGGTGGTTGCTTCATTTATTATTGCCTTCCTCTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCTTTGATAATTAGCGGTCACATTAGCGAGGTGAGGTTCATTTTTCTACGCTTCAACGTTAAGAAACTAGCACATTTGTTCAAGTCTTGA 573 0.4049 MIGPDWPYGVIGTLCAFVAGAQMPLFALGISHALVSYYMDWETTQREVKKIVFLFCGGAVITVTVHAIEHLFFGIMGERLTLRVREKMFTAILKNEIGWFDETTNTSSMLSSRLESDATLMRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIISGHISEVRFIFLRFNVKKLAHLFKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46087g00001 190 PANTHER ABC TRANSPORTER B FAMILY 5 170 IPR039421 -
Trme46087g00001 190 Gene3D ABC transporter type 1, transmembrane domain 1 186 IPR036640 GO:0005524|GO:0016020
Trme46087g00001 190 SUPERFAMILY ABC transporter transmembrane region 2 166 IPR036640 GO:0005524|GO:0016020
Trme46087g00001 190 Pfam ABC transporter transmembrane region 11 166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme46087g00001 190 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 10 165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46087g00001 Trme-Chr46087 177 859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46087g00001 3 164 Calmodulin-binding Proteins AT2G36910 26.347 2.07e-10 57.4