Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4607g00001 ATGCCGGTTGAGGAACTGCTTGCAAGGTATAAAAAGGACCTGAGTGATGATGAGGATCAGGAAGATGAGTCAGATTATGCTTCTGCTTCATCAGAAGACCATCAGAACTCATCAGTCCATGATGATGCTGAGCAGAAGGATCCGGCTGTTTCTGTGGATGAAGATATGAAGTCCGGTGAGCAACTGGCTACCATACAGACTCAGGCAGAAGAACAGGGGGAAGCACTTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTCACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCGGATGAAATGGGGCTTGGAAAAACTATTATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGAATTTGGGGTCCACATCTAATTGTGGTCCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAGGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCAAAACGACGGATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAAGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAGTTGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGAAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAATGCCAATTTTTTTGGGATGATTGGTGTTATCATGCAACTTCGCAAGGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTCGGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGGTTGGGTCTTTTATTTACTCATCTTGATTATGGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTGCTACTTTAATTATGGAACGCACTGATATGGCTGACCTGGAAGTAATTAAGCCTGGACTGAAATGTCAGAAAAAGCCTCATGGAACAAACATTTTCGAAGAGATTCAAAGGGCAATTTGGGAGGAGAGGATAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAG 1610 0.4155 MPVEELLARYKKDLSDDEDQEDESDYASASSEDHQNSSVHDDAEQKDPAVSVDEDMKSGEQLATIQTQAEEQGEALCENSEERESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKVEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMIGVIMQLRKVCNHPDLFEGRPIVSSFDMCRIDIQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYGMTSWESDEVQAIETPATLIMERTDMADLEVIKPGLKCQKKPHGTNIFEEIQRAIWEERIREAKERAAAIAWWNSL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4607g00001 536 MobiDBLite consensus disorder prediction 1 59 - -
Trme4607g00001 536 Pfam SNF2-related domain 140 412 IPR000330 GO:0005524|GO:0140658
Trme4607g00001 536 FunFam Photoperiod-independent early flowering 1 93 368 - -
Trme4607g00001 536 CDD DEXQc_SRCAP 123 345 - -
Trme4607g00001 536 SMART ultradead3 119 312 IPR014001 -
Trme4607g00001 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 412 IPR027417 -
Trme4607g00001 536 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X3 369 429 - -
Trme4607g00001 536 MobiDBLite consensus disorder prediction 35 54 - -
Trme4607g00001 536 Gene3D - 91 368 IPR038718 -
Trme4607g00001 536 MobiDBLite consensus disorder prediction 1 16 - -
Trme4607g00001 536 Gene3D - 369 448 - -
Trme4607g00001 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 345 IPR027417 -
Trme4607g00001 536 PANTHER HELICASE SRCAP-RELATED 1 535 - -
Trme4607g00001 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 300 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4607g00001 Trme-Chr4607 12 1710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4607g00001 143 415 RAD5 or RAD16-like Gene Family AT5G43530 30.745 1.61e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme4607g00001 SNF2_N 1.7e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4607g00001 K11661 - gmx:100794898 880.552