Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme46078g00001 ATGGTCACAGGGGAAAGACAAGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTCACTTTCTTTGATAAAGAAACAAACACTGGAGAAGTTGTTGGGAGAATGTCTGGTGACACTGTTCTAATTCAAGATGCCATGGGTGCTGCCATGGCTGTTATCATAGGCAGAATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAGACAATTGGCTCAATAAGAAC 257 0.3969 MVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGAAMAVIIGRMASKGQTAYAKAAHVVEQTIGSIRT 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme46078g00001 86 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 59 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme46078g00001 86 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 56 IPR039421 -
Trme46078g00001 86 SUPERFAMILY ABC transporter transmembrane region 2 86 IPR036640 GO:0005524|GO:0016020
Trme46078g00001 86 Gene3D ABC transporter type 1, transmembrane domain 1 86 IPR036640 GO:0005524|GO:0016020
Trme46078g00001 86 Pfam ABC transporter transmembrane region 2 61 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme46078g00001 Trme-Chr46078 367 991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme46078g00001 1 64 Calmodulin-binding Proteins AT2G36910 40.625 3.73e-11 55.5