Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45990g00001 CTTTCAGGACAGCTGCTAGCAGCTTATGGCTACGGGGCTCCAGAATTTGAGTCAGGAATTTATACTTACCAGAGTGATGTGTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACCGGTCGTCAGTCCTATGACAGGAAGCGACCTCGGGGTGAGCAGTTTCTTGTAAGATGGGCAATTACTCAACTTCATGATATTGATGCATTATCAAGGATGGTTGATCCTTCTCTAAATGGAGCTTACCCTGCCAAATCTTTGTCAAATTTCGCAGACATTATTTCTAGATGTGTTCAGTCCGAGCCGGAATTTAGGCCAGCAATGTCCGAGGTTGTCTTGTACTTGCTAAATATGATAAGGAGGGATTCTCAACAAAATGAATCAAATGAAAGATGA 393 0.4249 LSGQLLAAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAITQLHDIDALSRMVDPSLNGAYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRDSQQNESNER 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45990g00001 130 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45990g00001 130 Gene3D Transferase(Phosphotransferase) domain 1 2 130 - -
Trme45990g00001 130 PANTHER OS01G0253100 PROTEIN 7 122 - -
Trme45990g00001 130 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1 128 - -
Trme45990g00001 130 Pfam Protein tyrosine and serine/threonine kinase 11 112 IPR001245 GO:0004672|GO:0006468
Trme45990g00001 130 SUPERFAMILY Protein kinase-like (PK-like) 9 118 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45990g00001 Trme-Chr45990 64 835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45990g00001 1 121 Strubbelig Receptor Gene Family AT4G03390 87.603 6.91e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme45990g00001 PK_Tyr_Ser-Thr 8.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45990g00001 - - mtr:25487613 251.906