Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45985g00001 GTTTCTTCTCGAAGATATGTGTGCTCGAAGGAGGGACATCAGCTTAGCTCAAGAACTGGTTGTCCAGCGTTCATAAGGGTACAATTAAATGATTCTGGAAAGTGGGTTGTTGATCATTTTCACAAGGATCATAACCATAGTCTTGAAAATGAAAGTGAAAATTTCGCTCCAACATTGCAGTCGAATGGTGCTGCAGCTATTGATTCTTCTACTACTGAAGTCACTCGCAGGCCGAGGAAGAAAAAGATTGAAGTAGCCAATGATGAACCTATTTGTCCCTTTGGTGTTATTGATTTCAAGCGCCTGAGAAAGGAAGAACTTGAAGGACAGGCTAGAATTGAACCACATGTTGGTCAAGAGTTTAATACTCCTAATGAAGCCTACCAATTTTATCATGCTCATGCAGCATATTTGGGTTTTGGAATCCGAATCGGTCAATTGTTTCGGTCTAAAAATGACGGATTGATTACATCGCGACGCTTTGTGTGTTCAAAAGAAGGGTTCCAGCATCCTTCAAGAGTTGGTTGTAGGGCTTATTTAAGGATTAAGAGACAACCATCAGGAAAGTGGGTAGTTGACCGTCTTGAAAAAGATCATAATCATGATCTGGGCCTTGAAAAGGAAAGTAAGACAAAAAGTATTCCTGCTTCTAACATTTTGAATGAGGAGGTAAATACTGAATTGGTGAATGACGACATATTTAGGATAGATAACTACCCTGTCCTGAGAGGAGGCAGACAAAATCACATTAGAAGTGATTGGTACAACATGCTTTTAGAGTATTTTCAATCAAAACAAGCTGAAGATACAGGATTCTTTTATTCCATGGAAGTCGATAATGGTAATTGCATGAGCATATTCTGGGCCGACGGAAGATCTAGATACTCATGTAGTCAGTTTGGTGATGTCCTTGTTGTAGACACATCGTATAGAAAAAGCGTCTATATGGTACCATTTGCTACTTTTGTTGGAGTTAACCACCACAAGCAACC 992 0.3972 VSSRRYVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKDHNHSLENESENFAPTLQSNGAAAIDSSTTEVTRRPRKKKIEVANDEPICPFGVIDFKRLRKEELEGQARIEPHVGQEFNTPNEAYQFYHAHAAYLGFGIRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCRAYLRIKRQPSGKWVVDRLEKDHNHDLGLEKESKTKSIPASNILNEEVNTELVNDDIFRIDNYPVLRGGRQNHIRSDWYNMLLEYFQSKQAEDTGFFYSMEVDNGNCMSIFWADGRSRYSCSQFGDVLVVDTSYRKSVYMVPFATFVGVNHHKQP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45985g00001 331 Pfam FAR1 DNA-binding domain 129 203 IPR004330 -
Trme45985g00001 331 Pfam FAR1 DNA-binding domain 11 48 IPR004330 -
Trme45985g00001 331 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 3 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45985g00001 Trme-Chr45985 1 992 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme45985g00001 FAR1 7.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45985g00001 - - mtr:112419201 624.78