Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45939g00001 ATGATTCCTATTGCTTTGTACATTTCTATAGAGCTTGTTCGTGTCGGCCAGGCCTATTTCATGATCGAAGACCATCGGTTGTATGATGAGGCTACCGATTCAAAATTTCANTGCAGGGCTTTGAATATTAATGAAGATTTGGGGCAAATTAAGTATGTGTTCTCAGATAAAACTGGTACACTTACTGAGAATAAGATGGAGTTTCAATGTGCTAGCATTTGGGGAGTTGATTACAGTTCCACAAAAGCCAGCATGGATGGTGAGTTAGGTGAATACTCAGTGCAAGTTGATGGAAAGGTGTTGAAGCCAAAGATGAAAGTGAAAGTTAATCCAGAGCTTTTGAAATTGGCAAGAAGTGGAGTTGAAAAYGAGGAAGGAAAAAGGATTTATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTCTTGTTGTCGACACACCTGAACCTGATGTCAAGCTGTTAGATTACCAAGGTGAATCACCAGATGAACAAGCATTGGCGTATGCCGCCGCAGCCTATGGTTTTATGCTTATCGAACGAACCTCCGGCCACATTGTCATCGATATTCATGGA 582 0.4107 MIPIALYISIELVRVGQAYFMIEDHRLYDEATDSKFXCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSTKASMDGELGEYSVQVDGKVLKPKMKVKVNPELLKLARSGVENEEGKRIYDFFLALATCNTIVPLVVDTPEPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45939g00001 194 Gene3D - 51 63 IPR023214 -
Trme45939g00001 194 FunFam Phospholipid-transporting ATPase IC 51 63 - -
Trme45939g00001 194 Gene3D - 64 118 IPR023299 GO:0000166
Trme45939g00001 194 Gene3D - 36 50 - -
Trme45939g00001 194 ProSitePatterns E1-E2 ATPases phosphorylation site. 56 62 IPR018303 -
Trme45939g00001 194 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 192 - -
Trme45939g00001 194 SUPERFAMILY HAD-like 41 82 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45939g00001 Trme-Chr45939 1 970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45939g00001 1 194 Primary Pumps ATPases AT5G04930 69.588 1.24e-91 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45939g00001 K14802 - gmx:100813982 322.783