Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4592g00001 ATGATGCCTGAGGAAAGTAAGCATTGCCATAATGGATGTGTGACTGTAGCATGTGAGAATACTAAATTTGTTAACATTAAGTACTATGATCGTCTTCAAATAGCGCTTAAGATTCGGGACATTAAATCAAATGTTGGTGAAATCAATGATGGCGTCAAAATCAATTCTTCGAATCAAGGACAAATCAGTTCTACAAAAAACTCAGACATGACATGGAAGATCCTTCAACGGAGTCCTTATCCGGGCCAAACTGAAATTGTGGGCTTTAAAGCTCAAAATGAGAAATTGATTGATTGGTTGGAAGATGGACAGGAAAATTGCAATGTCGTGGTCGTGGTAGGAATGGCAGGGCAGGGAAAAACCACTCTTGTCAAGCAAATTTTTGACAACAACGAGGTGATTGGGAAGTTTGAAAGCAGCGTATGGATCCATGTGTCTGAATTCGACTCTCCAAAGGAATTCTTCAGGGTCATGTTGACGAAGTTTTACCAACAAACCGGGGAGAATGATAATCTTCCTCATGGCTTTCACACAATGGGTCTAGAATCATTGAAAAATGGAGTGAAAAAACACTTGCGCAAAAAGAGGTATGTTCTCTTCTTTGATGATGTGTGGAACAATAAATTTTGGCAGGAAATTGAACATACCGTAAGTGATAATGAAAATGGAAGTAGGATAATTATCACCACAAGGAACAAAGAAGTTGCAAAGACTTGTAAGAGATCTTCTGTTGTTGATGTTAAAGTGCATGAAATGCAACCTTTAACTCATAAAGAATCTTTGAAGCTGTTTTGTCAGGTTGCGTTAAAACTTGACATTGATAAAAAAGATTGCCCAAACAAGTATGTAAAATTATCTTCTGATATTGTGAAAACATGTGATGGTTTACCACTAGGAATTGTGGCTATTGGTAAGCATGTACCAGGTGAGAATCCTTACACATTTAAATGGAAAAGCATAATTCAAGAGGCAGGTATTACAGAAACATTAGGTTTGAGTTATGATTATCTGCCTGACCATCTTAAACCATGCTTATTGTATTTTGGAATCTACCCTCAAGATTTTGCAGTTAAATCAAAGAGACTAATTAAACAGTGGATTGCAGAAGGGTTTGTATTTGTAAGCCATGAAAATGACAAAACTTTGGAGGAAGTTGCAGAAGACTATTTAGCAAGTCTGATTGATAGAAATTTGGTGCAAGTATCTTCATTTACCATTGATGGAAACCCTAGAAGCTGTCGCGTTCATTACCTAGTACATGATATGATCCTTAGAAAATCTGAGGAATTATCTTTTTGCCAGTTTGTTAATGAAGATAATCGATCAGACGTAACTGGGATAGTAACTAGGCACCTTTCAATAGCAACAAAATCCACTGAAGAGTTGCCTGGATTTTTTGATCATTTAGCAGATGAGATTCAAAGCTCATTCATTCGCTCGCTGCATTTCTTCACAAAGGAAAAACTACCTCAACACTTTGTTAGCAGAATCCCTAAAAAATACAAGACATTGAAGGTACTTGATTTTGAAAATGCTAAAATTTCTTATGATTTTGATGATTTGGGGGATTTGATCTACTTGAAGTACTTAAGCTTCAGGAATACACAAGTACAAAGTATTCCAAAATCCATTGGGAAGCTCATGAACTTGGAGAGCTTGGATCTAAGAGA 1670 0.3659 MMPEESKHCHNGCVTVACENTKFVNIKYYDRLQIALKIRDIKSNVGEINDGVKINSSNQGQISSTKNSDMTWKILQRSPYPGQTEIVGFKAQNEKLIDWLEDGQENCNVVVVVGMAGQGKTTLVKQIFDNNEVIGKFESSVWIHVSEFDSPKEFFRVMLTKFYQQTGENDNLPHGFHTMGLESLKNGVKKHLRKKRYVLFFDDVWNNKFWQEIEHTVSDNENGSRIIITTRNKEVAKTCKRSSVVDVKVHEMQPLTHKESLKLFCQVALKLDIDKKDCPNKYVKLSSDIVKTCDGLPLGIVAIGKHVPGENPYTFKWKSIIQEAGITETLGLSYDYLPDHLKPCLLYFGIYPQDFAVKSKRLIKQWIAEGFVFVSHENDKTLEEVAEDYLASLIDRNLVQVSSFTIDGNPRSCRVHYLVHDMILRKSEELSFCQFVNEDNRSDVTGIVTRHLSIATKSTEELPGFFDHLADEIQSSFIRSLHFFTKEKLPQHFVSRIPKKYKTLKVLDFENAKISYDFDDLGDLIYLKYLSFRNTQVQSIPKSIGKLMNLESLDLR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4592g00001 556 PANTHER DISEASE RESISTANCE PROTEIN RP 34 555 IPR044974 GO:0006952
Trme4592g00001 556 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Trme4592g00001 556 Pfam NB-ARC domain 92 322 IPR002182 GO:0043531
Trme4592g00001 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 348 IPR027417 -
Trme4592g00001 556 Gene3D Ribonuclease Inhibitor 446 556 IPR032675 -
Trme4592g00001 556 Gene3D - 339 426 IPR036388 -
Trme4592g00001 556 PRINTS Disease resistance protein signature 191 205 - -
Trme4592g00001 556 PRINTS Disease resistance protein signature 109 124 - -
Trme4592g00001 556 PRINTS Disease resistance protein signature 545 556 - -
Trme4592g00001 556 PRINTS Disease resistance protein signature 293 307 - -
Trme4592g00001 556 FunFam Probable disease resistance protein At1g63360 334 425 - -
Trme4592g00001 556 Gene3D - 254 338 IPR042197 -
Trme4592g00001 556 SUPERFAMILY L domain-like 407 556 - -
Trme4592g00001 556 Gene3D - 66 249 IPR027417 -
Trme4592g00001 556 FunFam Probable disease resistance protein At1g61300 70 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4592g00001 Trme-Chr4592 1 1670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4592g00001 110 429 WRKY Transcription Factor Family AT5G45050 23.824 1.44e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4592g00001 K13457 - gmx:100798997 425.246