Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45923g00001 AAAATGGGAAATGGGCTTGAAAGGCAATTGAGTTTTCATAAGCAGCTTTCAGGACAGTCAAGACAACATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCACATGACAATGGATCGAATTATAGTTTCGAGAAGAAGAGGGAGGTTAGGGAAAGAAGTAGCAGTAGTCTACATCGATCAACTAGCCAGAAGGGACAAGATAATTTTCTGATGGGTGGACTTGAATTTGTTAAGACAATCATTGCAAGAATAGTTTCTGAACCTGTGCAAGCAATGTCCAGAAAGTTCCATGAAATGAATGGACAGTACATAACGCGTATGAAAGAGGGTATTCGGGAACTCATGGTCAGTGCAGATAACCAGGGACAAATACTTACTTTTCAAAATGTTTTGCAGAACAGGTCTGACATATCCTATGATGTCCTAGTGAAGTGTCACCTAGCGCAACTGGAAATTTTGGTTGCATTAAAAACTGGTGTAGTCCATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATTTATCATGTCGAAATCAGTTGCATGTCGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAACGGTTTTTGCAGGGAATGTATGTGTGTTGTGTGTTCTAAGTTTGACAATGCGTCGAGCACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTACGAGAATCTTATATTAGAAATGGACTTAGTACTACTGGAACGAAAGGGACGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGATTGGTCACCCGAATCTCTTTGCAAGGAACTTGAATATGTGAAGAGAATCTTTTCTGCTAGCAAGGATATTAGAGGGAGACAGTTGCATGAGATTGCGGATAAAATGTTGCC 992 0.4002 KMGNGLERQLSFHKQLSGQSRQHDDVRSPTQSVGSHDNGSNYSFEKKREVRERSSSSLHRSTSQKGQDNFLMGGLEFVKTIIARIVSEPVQAMSRKFHEMNGQYITRMKEGIRELMVSADNQGQILTFQNVLQNRSDISYDVLVKCHLAQLEILVALKTGVVHYLHLDDNISSSDLAQVFLNLKCRNLSCRNQLHVDECDCKLCVQKNGFCRECMCVVCSKFDNASSTCSWVGCDVCLHWCHTDCGLRESYIRNGLSTTGTKGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSPESLCKELEYVKRIFSASKDIRGRQLHEIADKMLP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45923g00001 331 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 17 330 IPR004082 -
Trme45923g00001 331 MobiDBLite consensus disorder prediction 1 66 - -
Trme45923g00001 331 MobiDBLite consensus disorder prediction 10 40 - -
Trme45923g00001 331 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 135 150 IPR004082 -
Trme45923g00001 331 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 295 314 IPR004082 -
Trme45923g00001 331 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 96 118 IPR004082 -
Trme45923g00001 331 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 176 197 IPR004082 -
Trme45923g00001 331 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 222 242 IPR004082 -
Trme45923g00001 331 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 150 165 IPR004082 -
Trme45923g00001 331 CDD PHD_OBE1_like 215 274 IPR047578 -
Trme45923g00001 331 MobiDBLite consensus disorder prediction 41 58 - -
Trme45923g00001 331 Pfam PHD - plant homeodomain finger protein 185 308 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45923g00001 Trme-Chr45923 1 992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45923g00001 185 330 PHD Gene Family AT5G57380 26.712 7.10e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45923g00001 - - ahf:112789425 545.814