Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45908g00001 ATGAGTAGCACTTCAAGTGTAGATGATGGTCACAAACCGCTAAAGCGTAGTTGGTCATCATTATCGAGTGAGGATTATAGTCACAAAACGCTAAAGCGTAATTGGTCATCATCATCAAGTTTGGATGATGACTGCAAAAGGATAAAGCCTAGTCAGTCATTATTATCAGGCGAGGAAGATGATGACGAAGATGATCAAGGAGGTAACTCGGGAGGAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACATCGGCGGAGGATGAAATTTTGGTAGAACATGTTAAGAAATATGGATTGGGAAATTGGAATGCGGTGCAAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCAAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACCGATGAAGAAAAAAAGAAAGTCCTTGAGCTCCACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGCCGATCAAGAAAATGGCGACGCAAATGAAGCTAGCCAATGTGATGAAACAGAAAACTACAATATACCTGTTGTGGAATTTAAAGATTACAAATTCCACCCAG 700 0.4186 MSSTSSVDDGHKPLKRSWSSLSSEDYSHKTLKRNWSSSSSLDDDCKRIKPSQSLLSGEEDDDEDDQGGNSGGGEEGSLKKGTWTSAEDEILVEHVKKYGLGNWNAVQKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKADQENGDANEASQCDETENYNIPVVEFKDYKFHP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45908g00001 233 ProSiteProfiles Myb-like domain profile. 128 178 IPR001005 -
Trme45908g00001 233 Pfam Myb-like DNA-binding domain 83 143 - -
Trme45908g00001 233 CDD SANT 135 176 IPR001005 -
Trme45908g00001 233 Gene3D - 77 133 - -
Trme45908g00001 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 182 IPR017930 -
Trme45908g00001 233 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 61 228 - -
Trme45908g00001 233 CDD SANT 82 127 IPR001005 -
Trme45908g00001 233 FunFam MYB-related transcription factor 79 132 - -
Trme45908g00001 233 MobiDBLite consensus disorder prediction 39 56 - -
Trme45908g00001 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Trme45908g00001 233 SUPERFAMILY Homeodomain-like 78 174 IPR009057 -
Trme45908g00001 233 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Trme45908g00001 233 Gene3D - 135 181 - -
Trme45908g00001 233 MobiDBLite consensus disorder prediction 1 82 - -
Trme45908g00001 233 MobiDBLite consensus disorder prediction 195 216 - -
Trme45908g00001 233 SMART sant 79 129 IPR001005 -
Trme45908g00001 233 SMART sant 132 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45908g00001 Trme-Chr45908 55 956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45908g00001 65 227 MYB Transcription Factor Family AT2G26960 53.846 5.79e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme45908g00001 Myb_DNA-bind_6 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45908g00001 K09422 - gmx:100800658 234.572