Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme458g00001 GATGAAACAGAGCTGATTGATAATATTGTTGAATCAGTATGGACAAAACTACGTCCCAAAATGCCTTCTTATGAAGATGGGTTGGTTGGAATTGACTCAAGAGTTGAAAAAATGGCTAAAGTTATAAGGGTGGAATCCATGGACACTAGCTTTGTCGGAATATGGGGTATGGGCGGCATAGGAAAGACAACTCTAGCTAGAGTTGTCTTCAAGAAAATCAAACATCAGTTTGATATAAGTTGCTTCCTTGAAAATGTTCGAGAGGTTTCTGAAGAAATAGATGGTTTGCTTTCTTTTCAGAGAAAGCTTCTTTCTCATTTAAACATAAAAGGGTTAGAAATTCGAAACTTGGACGAAGGAAAGAACACAATAAGAAACCTTTTGTCCAACAAGAAAATTCTCCTTGTTGTTGATGATGTTGATGACATAAACCAATTAGAGAGTTTGGCTCATAGAGATTGGTTTGGTCATGGAAGCAAGGCCTTTAAAAGAGATCAACCTCATGAACAATATTTGGATTTGTCAAAAGTTGTTGTTCAATATGCTGGTGGTCTTCCTTTAGCACTTAAGCTTTTGGGTTCATTTCTTTGTGGAAGAAGTGAATCTCAATGGAAAGAAGTTGTGGATATGATTCAACAAGTACCACCAAATGATATTGTGAAGAAATCACTTATAATAAGCTACAACGGTTTATCAATGCGTTACAAAACCTTGTTTCTTGACATTGCTTGTCTTTTCAAAGGGTGGGTTAAAGAGATTTTAACGCAAATATTACAAATATGTGATCGTTATCCGCCAATTGGAATTGAACTTCTGATTGAAAAATCATTGGCAAGTTATGACGGATTTCGTTTGGGAATGCATGACTTACTTCAAGAAACGGGAAGAGAAATTGTTGTTGAAGAATGTCCTATAGATCCTCTCAAACGCACTAGGCTATGGTCTTTAAAGGACATTGATGAAGTACTAAGCTCTAATAATAAAAATAAGGTATCTGAATCGATTCAGGGTATAATATTCGATTCTGTGCCAAAGTCATATGAAGCAAAGTGGGATCCTGAAGCCTTGTCGATGATGTGTAATCTTAAATTTCTTATCATAAATCAAAATGTACAGCTTCCTCGCGGCCTCAAATGTCTTTGCAGATCATTGAAATTTCTCCAGTGGATGGAGTATCCTTTGGAAGCTTTACCAGATGGTGTCCAGCTAGATGAAATTATAGAGTTGAGGATGCATCATAGTAAAATCAAATATATTTGGAGTGAAACTCAATTTTTTGCAAAGCTGAAGTTCATTGATCTGAGCTTTTCCAAAAATCTAATTCAAACACCTATAGTTTCCGGAGCTCCATGTCTTGAACGCATGCTTCTTATCGGTTGTACAAACCTTGTTGAAGTTCATCATTCTGTTGGACAACACAAGAAGCTTGTTGTGTTATACTTGAAAGGCTGCAAAAATCTTAAAACCTTTCCAAGAAAATTGGAAATGGATTCTCTGGAGGAGTTGAATCTTTCAGGCTGCTCAAAAGTTAAAAAGCTCCCTGAGTTTGGAAAGAACATGAAATGTTTATCACTGCTTAATTTGGAAAATTGCATAAATCTTATTTGCCTACCAAACTCCATTCGCAATTTGAAGTCACTCAAAAGACTCTACATTTCTGGTTGCACAAAATTTTCCAAACTCCCTGAAAGTATGAATGAAAATGAGTGTTTGGAGGAGCTTGATCTTAGAGGGACTAATGTAAGAGAAANAAAGTTTAGGAGACAGCAAGATCCAAAGGAGTTGATAATATTGCCTCCTCTTTCCAGCTTATTAGCTTTGACATCATTGAATTTAAGTTACTGTAACCTTAATGATGAATCAATTCAGAATATTGGTTCCTTAAAGTTTTTGCAGGAATTGGATCTAAGTGGGAACAATTTTGTTAATCCACCTGCTCACTGCATTAGTAATCTTCCTATGCTGCAGAATTTGTCCTTCACTAATTGTCCAAGGCTTGAGTCTTTGCCTCAGCTTCCGCAAAATGTACAATCTTTATACACCAACAATTGTACTCAACTTAATCCCTTAAATTTGGATCCACAAAGACTATGGAAGATCTTTGAGTCACATTTACGTTTGGATCAGGTACGTCTCTTAAAAGAAACCAAAATTCTCTTCGGAAGTTGTAGAGTCATACAGTCGCATATCTCAGTCGTTAGATGA 2205 0.3619 DETELIDNIVESVWTKLRPKMPSYEDGLVGIDSRVEKMAKVIRVESMDTSFVGIWGMGGIGKTTLARVVFKKIKHQFDISCFLENVREVSEEIDGLLSFQRKLLSHLNIKGLEIRNLDEGKNTIRNLLSNKKILLVVDDVDDINQLESLAHRDWFGHGSKAFKRDQPHEQYLDLSKVVVQYAGGLPLALKLLGSFLCGRSESQWKEVVDMIQQVPPNDIVKKSLIISYNGLSMRYKTLFLDIACLFKGWVKEILTQILQICDRYPPIGIELLIEKSLASYDGFRLGMHDLLQETGREIVVEECPIDPLKRTRLWSLKDIDEVLSSNNKNKVSESIQGIIFDSVPKSYEAKWDPEALSMMCNLKFLIINQNVQLPRGLKCLCRSLKFLQWMEYPLEALPDGVQLDEIIELRMHHSKIKYIWSETQFFAKLKFIDLSFSKNLIQTPIVSGAPCLERMLLIGCTNLVEVHHSVGQHKKLVVLYLKGCKNLKTFPRKLEMDSLEELNLSGCSKVKKLPEFGKNMKCLSLLNLENCINLICLPNSIRNLKSLKRLYISGCTKFSKLPESMNENECLEELDLRGTNVREXKFRRQQDPKELIILPPLSSLLALTSLNLSYCNLNDESIQNIGSLKFLQELDLSGNNFVNPPAHCISNLPMLQNLSFTNCPRLESLPQLPQNVQSLYTNNCTQLNPLNLDPQRLWKIFESHLRLDQVRLLKETKILFGSCRVIQSHISVVR 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme458g00001 734 Gene3D - 161 232 IPR042197 -
Trme458g00001 734 PRINTS Disease resistance protein signature 494 510 - -
Trme458g00001 734 PRINTS Disease resistance protein signature 182 196 - -
Trme458g00001 734 PRINTS Disease resistance protein signature 51 66 - -
Trme458g00001 734 Pfam NB-ARC domain 35 148 IPR002182 GO:0043531
Trme458g00001 734 SUPERFAMILY "Winged helix" DNA-binding domain 224 323 IPR036390 -
Trme458g00001 734 SUPERFAMILY L domain-like 349 707 - -
Trme458g00001 734 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 606 IPR044974 GO:0006952
Trme458g00001 734 Gene3D Ribonuclease Inhibitor 568 706 IPR032675 -
Trme458g00001 734 Gene3D Ribonuclease Inhibitor 496 567 IPR032675 -
Trme458g00001 734 Gene3D Ribonuclease Inhibitor 313 495 IPR032675 -
Trme458g00001 734 Gene3D - 14 160 IPR027417 -
Trme458g00001 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 242 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme458g00001 Trme-Chr458 366 2902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme458g00001 2 609 WRKY Transcription Factor Family AT4G12020 30.568 1.83e-71 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme458g00001 - - gmx:100799850 910.598