LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme45891g00001	ATGGACCTTTTCATGAGGTGCATGGAGCCCGTTGAGAAATGTTTGAGGGATGCAAAAATGGACAAGAGCAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATTCCCAAGGTGCAGTCATTGTTGCAGGATTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATCAACCCTGACGAGACTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCATGAGTTATGAACATGAGAAACTTAAGAAACATTTGTTGATGGATGTCAATCCTCTTTCACTTGGTTTGGAAACTGCTGGTGGAGTCATGACTGCCCTCATTCCAAGGAACACTTCACTCCCATCCAAAAAGCAGGAAATTTTCTCAACCTACTCAGACAACCAATCTGATGTCCTTATCCAAGTGTACGAGGGTGAGAGAGGCATGACCAAGGAAAATAACTTGTTGGGTACATTCCAGCTTTCTGGCATTCCTCCTGCTCCAAGGGGTGTTCCTCAGATCAATGTTTGTTTTGACGTTGATACTAATGGTATCTTAAATGTCTCTGCTGAGGACAAGACTACTGGGCAAAAGAACAAGATCACTATCACCAATGACAAAGGCAGGCTTTCAAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAAGGTTGAGGATGAGGAGCACAAGAAGAAGACCGTTGCTAAGGATTCCATGGAGAAGATGGTGCAGGGGGAGGAAAAGCACAATTCTACTAAAGATACTCTAGATCAACACTTGAATGCACTTTTCTAA	783	0.4444	MDLFMRCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQSLLQDFFNGKELCKSINPDETVAYGAAIQAAIMSYEHEKLKKHLLMDVNPLSLGLETAGGVMTALIPRNTSLPSKKQEIFSTYSDNQSDVLIQVYEGERGMTKENNLLGTFQLSGIPPAPRGVPQINVCFDVDTNGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKVEDEEHKKKTVAKDSMEKMVQGEEKHNSTKDTLDQHLNALF	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme45891g00001	260	PANTHER	HEAT SHOCK PROTEIN 70KDA	1	244	IPR013126	GO:0005524\|GO:0140662
	Trme45891g00001	260	Gene3D	-	55	72	-	-
	Trme45891g00001	260	FunFam	Heat shock cognate 70 kDa protein 2	7	54	-	-
	Trme45891g00001	260	Pfam	Hsp70 protein	2	249	IPR013126	GO:0005524\|GO:0140662
	Trme45891g00001	260	SUPERFAMILY	Actin-like ATPase domain	2	74	IPR043129	-
	Trme45891g00001	260	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	73	255	IPR029047	-
	Trme45891g00001	260	Gene3D	-	7	54	-	-
	Trme45891g00001	260	MobiDBLite	consensus disorder prediction	221	260	-	-
	Trme45891g00001	260	Coils	Coil	208	228	-	-
	Trme45891g00001	260	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	79	234	IPR029047	-
	Trme45891g00001	260	ProSitePatterns	Heat shock hsp70 proteins family signature 3.	28	42	IPR018181	-
	Trme45891g00001	260	FunFam	Heat shock 70 kDa	78	232	-	-
	Trme45891g00001	260	MobiDBLite	consensus disorder prediction	221	251	-	-
	Trme45891g00001	260	PRINTS	70kDa heat shock protein signature	25	41	-	-
	Trme45891g00001	260	PRINTS	70kDa heat shock protein signature	57	77	-	-
	Trme45891g00001	260	PRINTS	70kDa heat shock protein signature	83	102	-	-
	Trme45891g00001	260	PRINTS	70kDa heat shock protein signature	164	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme45891g00001	Trme-Chr45891	37	819	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme45891g00001	1	236	Calmodulin-binding Proteins	AT3G12580	84.388	1.83e-144	417

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme45891g00001	K03283		-	osa:4339012	403.675