Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4581g00002 ATGCCTATATCCCAACATCATAATCAACAGCTTGGCAATAATGCATTTTCAACGGAGAAGCGTCTCAACAGCAACAATTTTTCTTCTTCATCTCTTATGCAATCACAGCAGCTTTCTGTGAATCAAACCCCGAATACGCACAAGCCACGCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCTCAACCAAATCTCCTGAAAAGAAATCAACAAGTACAAACTACAATAGGCGGGATCTTGGTAGTGGAGCCTGCCAATAATCTGACACAGGACCTTCAGAGTAAGTCTGACATGCATATCAAACAAGAGTTCTCAAATGTAAAAGGATCTGACCAACTAAAGTATAAAGGGGCTACTACTACTGATCAGCTTGAAGCTTCGTCTGGAACATCTTACTGTCTGGATCCCGGTAATGTCCAGCAGAGTTTGCCATTATCCAACTTCTGCATGGAAAGTGATGTCCAATCGAACCCTCGAAACACTCTGCCATTTGAATCTAATTTTGATGGTCTAATGTCTGATACTATGCTTTCTAGGGGTTATGACTCTCAAAAAGATCTTCAAAATTTGTTGGCTAATTATTGTGGTGCTCCAGGAGACATTGAAACCGAGCTGTCCACTGCTGACATCAGCTCACAGTCATTTGGATTACCCGACATGGCTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTGATGACACTTCTGGGGTTCTGAACAATGGCGTGCGGGCAAACCAAACTCAACGAATGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTCGGAAGATGTATTGATGTAACCCGCTACAAGGGATATGATGAACTCCGGTATGATTTGGCACGAATGTTTGGAATTGAAGGGCAACTGGAAGATCCTCAAAGAACTGACTGGAAATTAGTATATGTGGATCATGAGAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAGGAATTTGTAAGCTGTGTTCAGAGTATAAAGATATTATCATCAGCTGAGGTGCAGCAAATGAGCTTGGAAGGGGATTTAGGTAATGTTCCAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTCAATAGGTGA 1194 0.4271 MPISQHHNQQLGNNAFSTEKRLNSNNFSSSSLMQSQQLSVNQTPNTHKPRTITRVPSTLTDGEAPSCSTSPSTNNCQISQPNLLKRNQQVQTTIGGILVVEPANNLTQDLQSKSDMHIKQEFSNVKGSDQLKYKGATTTDQLEASSGTSYCLDPGNVQQSLPLSNFCMESDVQSNPRNTLPFESNFDGLMSDTMLSRGYDSQKDLQNLLANYCGAPGDIETELSTADISSQSFGLPDMAFKPGCSNDVGIDDTSGVLNNGVRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLEGDLGNVPIPNQASSGTDSGNAWRGQYDDNSAASFNR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4581g00002 397 MobiDBLite consensus disorder prediction 20 79 - -
Trme4581g00002 397 SUPERFAMILY CAD & PB1 domains 283 348 - -
Trme4581g00002 397 MobiDBLite consensus disorder prediction 368 397 - -
Trme4581g00002 397 ProSiteProfiles PB1 domain profile. 270 354 IPR000270 GO:0005515
Trme4581g00002 397 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 359 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme4581g00002 397 Pfam AUX/IAA family 263 356 IPR033389 -
Trme4581g00002 397 Gene3D - 265 359 - -
Trme4581g00002 397 FunFam Auxin response factor 265 359 - -
Trme4581g00002 397 MobiDBLite consensus disorder prediction 363 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4581g00002 Trme-Chr4581 680 2093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4581g00002 25 397 B3 DNA Binding Superfamily AT1G19220 56.633 1.04e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trme4581g00002 AUX_IAA 3.7e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4581g00002 K14486 - gmx:100816054 635.565