Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45805g00001 ATGGGGCGTGCAAAAATAGCTATGAAATACGTCCAAAAGGAGAAATCTCGTAAACTAGCTTTCAATCAGAGAACAACTGGATTAAGGAGTAAAATTTCTGAATTTTCTAAGTCTGGTGCAAAAGCTTGCTTGATTGTGTACAATGATGATGATAATATNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTCCATGCTTCGAGAATATGAGCATCAAAAGATTGAGACACCTCCTGAGATATTTGATGTCAAAGACTACTTTAAAAATAAAAAAGATATAGCTGAAGCTGCGATTATCAAAGTGCACAAAGATATCCTCAAGAAGAAGTATCCAACTTGGCATCCAAATTTCAATAAAATGGAAGAGAGTAATCTCATTTCTTTCATTACTACTATAGAGGAAAAGATTGAAGCTTGTAATAAAAGAACTAGCATGCTAAAAAATATGCAACAAAGTGACACTAGTTTCTTGCAAAACACTCCTCAGATGCAAATTATGGTACAAGAGAATGTTACCATACCTCAAATGCAACAACAAATTCATTCTCATATGAAGTCAATTGATGATATTAGTGAGATGATGGTACAAGAAAATGTTACAATACCTCAAATGCAACAACAAATTTATGCTCGTATGAATTCAATTGATGATATCAGTGAGAAGATGATACAAGAGAATATTATCATACCTCAAATGCAACAACAAATTTATGCTCGTATGAAGTCAATTGATGATATTAGTGAGGTGACACTACAAGAGAATGTTTTCATACATCAAATGCAACAACAAATTCATGCTCCTATGAAGTCAATTGATGATATTAGTGAGATTATGGTACAAGAGAAGGTTACCATACATCAAATGCAACAACAAATTCACGTTCCTATGATGTCAATTGATGATATTAATGAAATGATG 930 0.3108 MGRAKIAMKYVQKEKSRKLAFNQRTTGLRSKISEFSKSGAKACLIVYNDDDNXXXXXXXXXXXXXXXSMLREYEHQKIETPPEIFDVKDYFKNKKDIAEAAIIKVHKDILKKKYPTWHPNFNKMEESNLISFITTIEEKIEACNKRTSMLKNMQQSDTSFLQNTPQMQIMVQENVTIPQMQQQIHSHMKSIDDISEMMVQENVTIPQMQQQIYARMNSIDDISEKMIQENIIIPQMQQQIYARMKSIDDISEVTLQENVFIHQMQQQIHAPMKSIDDISEIMVQEKVTIHQMQQQIHVPMMSIDDINEMM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45805g00001 310 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Trme45805g00001 310 Coils Coil 68 76 - -
Trme45805g00001 310 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Trme45805g00001 310 SUPERFAMILY SRF-like 1 55 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45805g00001 Trme-Chr45805 25 954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45805g00001 1 163 Type I MADS-box Gene Family AT5G55690 25.595 9.11e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45805g00001 - - tpra:123886171 434.491