Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme457g00001 ATGCTTGAACATGGAGTGTTCTTAAGTTTCAGAGGAGAAGATACTCGTGCATCATTCACTTCACATCTTTATGCTTCTCTTCAAAATGCTGGACTTAAAGTTTTTAGGGACGATGATTCGCTTAAAAGAGGAGATCACATTTCAACATCAATACATCTAGCAATCCAAAAATCTCAGATCACTGTGATTGTTTTTTCAAGAAATTATGCAGATTCGCAATGGTGTCTCGAAGAGTTGGTCAAAATAATGGACTGTCGTAGAGCACTAGGGCAGGTGGTTTTGCCAGTTTTCTATGATGTAGATCCATCTGAAGTACGTCACCAAACAGGTGAGTTTGGCAAAGCATTTCAAAGTCTATTGAATAGACTTTCAAATAAGAAAGGAATTCATCATAGGGTTGGAAAAGCAGTTCGATATCTTTTGAACAGTTTGTCAATCTATAAAGAAGAGTCACCGGATCAGGTGCTGAGATGGAGTTGGAGAGCAGCACTTCGTGAGGCAGCAGGGCTTGCAGGGTTTGTAGTGCTAAATGCCAGGAACGAAAGTGAGGCTATCAAGGATATTGTTGAAAAAGTTACGCAGTTACTAGACAAGACAGACTTGTTTGTTGCTAATAATCCAGTGGGAGTTGAAACTCGAGTACGAGATATGATTCAACTGCTAGATATCGAACATTCAAATGATGTGCTGCTACTTGGAATGTGGGGCATGGGAGGAATTGGGAAAACCACCATTGCAAAAGCCATATACAATAAAATTGGCCGAAATTTTGGAGCTAGGAGTTTCCTAGCAAATATTAGGGAGGTTTGGGAGAAAAATGATGGACAAGTGTCTTTACAACAACAACTTCTCTTTGATATTTGCAAGGAAACGACAACCAAGATACAAAACATTGAGGCTGGAAAAATTACATTAAAGGATAGACTATGTGGTAAAAGAGTACTTCTTATACTCGATGACGTGAGTACATTGGATCAATTGAATGCTTTGTGTGGAAGCCGGAAATGGTTTGGTTCAGGGAGTAGAATAATTATCACAACTAGAGATATGCATATACTTAGAGGGAATAGAGTTGACCAAATATACACAATGAAAGAAATGGATGAAAGTGAATCGATTGAACTTTTTAGTTGGCATGCATTCAAGCAAGAAATGCCAAGAGAAGATTTTGTAGGAATTTCTAGAAATGTAGTTGAGTATTCAGGGCGATTGCCGCTAGCTCTGGAAGTCCTTGGGTCATATTTGATTGATAGGGGGATAATAGAGTGGAAATGTATATTGGACAAACTCAAAAAAATTCCCAATGATCAAGTACATAAGAAGTTAAAAATAAGCTATGATGGTTTAAATGATGATCTTGAGAAAGAAATATTCTTGGACATCGCTTGTTTCTTTATTGGGATGGACCGGAATGATGTTATACATATATTAAATGGTTGTGAACTTCATGCAGAAATTGGAATAAATGTCCTTCTGGAACGTAGCCTTGTGACTGTTGATGATAGGAACCGGCTTGGAATGCATGATTTGCTGCGAGATATGGGAAGAGAAATCATACGTGAGGAATCACCGAAGGAGCCTGAGGAACGTAGCAGGTTGTGGTTTAGTAAGGATGCGCTTAATGTATTATCTGAACAAACTGGAACAAAAGTTGTTGAGGCACTGGCTTTGATGTTGCCAAGAGCTAATGCAAAATGTTTTAGTACTAAAGCATTTAAGAAGATGACGAGACTCAGATTGCTTCAACTTGCTGGAGTACAACTCGATGGAGATTTTGAATACCTTTCGAGAAATCTGCGATGGCTTTCTTGGAATGGATTTCCTTTAACATGCATACCCACGAGCTTTTATCTAGGAAATTTAGTTTCGATCGAGTTAGAAAATAGCAATATCAAACTTTTGTGGAAAGAAACCCAGAGGCTGGAGAATCTGAAAATTCTGAAGCTTAGTCATTCTCATTATCTGACACAGACCCCAAACTTTTCAAACTTGCCTAATCTTGAACAACTAGTACTCTCTGATTGTCCAATGTTGTCTGAAATTGAAAAGTTGGACGAGGACTTGGAACAGATGGAATCTTTAACCACCCTGATTGCAAATAACACTGCAATTACAAGAGTTCCATTTTCAATTATGCACCACATAGTAATTCCCACGAAATATCATCGATTTCCAAGTACCTTCCCAGTCTTCGAAGTCTTTGGGTGGAGTGTAGCTCAGAACTTCAACTTTCTCATGATGCAGCAATAA 2250 0.3849 MLEHGVFLSFRGEDTRASFTSHLYASLQNAGLKVFRDDDSLKRGDHISTSIHLAIQKSQITVIVFSRNYADSQWCLEELVKIMDCRRALGQVVLPVFYDVDPSEVRHQTGEFGKAFQSLLNRLSNKKGIHHRVGKAVRYLLNSLSIYKEESPDQVLRWSWRAALREAAGLAGFVVLNARNESEAIKDIVEKVTQLLDKTDLFVANNPVGVETRVRDMIQLLDIEHSNDVLLLGMWGMGGIGKTTIAKAIYNKIGRNFGARSFLANIREVWEKNDGQVSLQQQLLFDICKETTTKIQNIEAGKITLKDRLCGKRVLLILDDVSTLDQLNALCGSRKWFGSGSRIIITTRDMHILRGNRVDQIYTMKEMDESESIELFSWHAFKQEMPREDFVGISRNVVEYSGRLPLALEVLGSYLIDRGIIEWKCILDKLKKIPNDQVHKKLKISYDGLNDDLEKEIFLDIACFFIGMDRNDVIHILNGCELHAEIGINVLLERSLVTVDDRNRLGMHDLLRDMGREIIREESPKEPEERSRLWFSKDALNVLSEQTGTKVVEALALMLPRANAKCFSTKAFKKMTRLRLLQLAGVQLDGDFEYLSRNLRWLSWNGFPLTCIPTSFYLGNLVSIELENSNIKLLWKETQRLENLKILKLSHSHYLTQTPNFSNLPNLEQLVLSDCPMLSEIEKLDEDLEQMESLTTLIANNTAITRVPFSIMHHIVIPTKYHRFPSTFPVFEVFGWSVAQNFNFLMMQQ 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme457g00001 749 Pfam NB-ARC domain 211 446 IPR002182 GO:0043531
Trme457g00001 749 SUPERFAMILY L domain-like 557 712 - -
Trme457g00001 749 Gene3D - 366 450 IPR042197 -
Trme457g00001 749 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 119 IPR035897 -
Trme457g00001 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 461 IPR027417 -
Trme457g00001 749 Gene3D - 186 361 IPR027417 -
Trme457g00001 749 Gene3D Ribonuclease Inhibitor 532 717 IPR032675 -
Trme457g00001 749 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 708 IPR044974 GO:0006952
Trme457g00001 749 Gene3D - 2 130 IPR035897 -
Trme457g00001 749 SMART till_3 3 170 IPR000157 GO:0007165
Trme457g00001 749 ProSiteProfiles TIR domain profile. 2 196 IPR000157 GO:0007165
Trme457g00001 749 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 198 - -
Trme457g00001 749 Pfam TIR domain 4 129 IPR000157 GO:0007165
Trme457g00001 749 PRINTS Disease resistance protein signature 308 322 - -
Trme457g00001 749 PRINTS Disease resistance protein signature 401 415 - -
Trme457g00001 749 PRINTS Disease resistance protein signature 231 246 - -
Trme457g00001 749 PRINTS Disease resistance protein signature 639 655 - -
Trme457g00001 749 SUPERFAMILY "Winged helix" DNA-binding domain 437 543 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme457g00001 Trme-Chr457 858 4081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme457g00001 11 675 WRKY Transcription Factor Family AT4G12020 31.040 6.64e-78 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme457g00001 - - cam:101494533 1152.89