Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45794g00001 ACAAGAGCTCAGTTCCCAGATGGTTCTTCTGGGCAAGCACCGGAAGATGCCGATTATGGTAATTTCCACGTCAACAGGGACGTTTCTCCTTGTGTATATTTCATGCGTGGATCCTGCCAAAGAGGCAACTCGTGTTCATTTTCACACACATTTCAGGCTAAGAGACCACAGTGCAAGTTCTTCTTTTCCTTGCAGGGTTGCCGAAATGGAGAGTCTTGTTTATTTTCACATGATACGGACCGATCAGCAGCGTCAGCCCATCGAAACACCTGCCTGCCAGAAGATAATGCCATGAATTCTGCATCCCTTCTGAATTTGTTTCCCAAATCTAGAGACGGATCCATTCTGGTATTGGACGACACTTCTTTGCATTTCACCTCATCCCTTGCTTGCCACTATGATCCATCCAAAATAATTTCAACTACAAGTTTGTCAGAAACAACCTTTACAGAACCATCCCTTACAGGAGCCAGAATTTTATGGGGTCTATATCATCCGTACCAAACAATCATAGCCAAAGCAGGGAAGACTCTCATTCCTTGGAATGAAGTCCAATGTGTACTGTGGTTTCCTTGCTTCGATAGCTACGGTGAGGATTTGGCTGGAAAAAAGAAGGTTGTGCAGAACTTCTTCGAATATCTAGCCATTCGATTTTTGGCTGATGATTTGCAGGAGGTGCAAGTTATCATAACCATGAATAATATCAGATTTTCCCAACTTCAGGTGATTGCTTGTGCTCGTGATCTCTTACCATTTAATGGTGTTATAAAATAA 774 0.4289 TRAQFPDGSSGQAPEDADYGNFHVNRDVSPCVYFMRGSCQRGNSCSFSHTFQAKRPQCKFFFSLQGCRNGESCLFSHDTDRSAASAHRNTCLPEDNAMNSASLLNLFPKSRDGSILVLDDTSLHFTSSLACHYDPSKIISTTSLSETTFTEPSLTGARILWGLYHPYQTIIAKAGKTLIPWNEVQCVLWFPCFDSYGEDLAGKKKVVQNFFEYLAIRFLADDLQEVQVIITMNNIRFSQLQVIACARDLLPFNGVIK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45794g00001 257 MobiDBLite consensus disorder prediction 1 21 - -
Trme45794g00001 257 SUPERFAMILY CCCH zinc finger 25 50 IPR036855 GO:0046872
Trme45794g00001 257 Gene3D - 23 91 - -
Trme45794g00001 257 ProSiteProfiles Zinc finger C3H1-type profile. 25 52 IPR000571 GO:0046872
Trme45794g00001 257 ProSiteProfiles Zinc finger C3H1-type profile. 53 80 IPR000571 GO:0046872
Trme45794g00001 257 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 49 IPR000571 GO:0046872
Trme45794g00001 257 Pfam RNA-binding, Nab2-type zinc finger 57 77 - -
Trme45794g00001 257 SMART c3hfinal6 53 79 IPR000571 GO:0046872
Trme45794g00001 257 SMART c3hfinal6 25 51 IPR000571 GO:0046872
Trme45794g00001 257 SUPERFAMILY CCCH zinc finger 58 79 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme45794g00001 zf-CCCH 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45794g00001 - - tpra:123922711 478.789