Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45776g00001 ATGGAGTATTGGCCTCATAGATTTTCTTATGAGGAACTATGCATAGCTACAAAGGATTTTCATAATGAGAAGCTTATAGGTTCTGGAGGGTTTGGAAGAGTTTATAAAGGAACATTGATGAATAAAACATTGATTGCGGTTAAGTGTGTTAATCATGATTCTAAACAAGGGTTAAGAGAGTTTATGGCAGAGATTTCAAGTATGGGAAGGCTTCAGCATAAGAATTTAGTGCAAATGAAGGGGTGGTGTAGAANNNNTNNNNNNNNNNTNNNNNNNNNNGATTACATGCCTAATGGAAGCTTAAACAAATGGGTTTTTGATAAACCTGATAAAGTTCTGGGATGGAATCAGCGACGTAGGATTCTTGTTGATGTAGCAGAAGGGCTTAACTATCTTCATCATGGTTGGAATCAGGTTGTTATTCACAGGGATATTAAATCTAGTAATATTTTGTTGGATGCTGATATGAGAGGAAGATTGGGAGATTTTGGTTTGGCTAAGCTTTACCAACATGGGCAAGTTCCTAATACTACACGTGTGGTGGGGACAATAGGGTATTTGGCGCCAGAAATAGCGAACGTTGCGGCTCCGACTTCGGCGAGTGATGTGTATAGTTTTGGGGTGGTGTTGTTGGAAGTGGCTTGTGGAAGGAGGCCGTTGGAGGCGATGGTGGTGGATGAGGAAGTGGTGCTTATTGATTGGGTTAGGGAGTTGTATGCAAGAGGGTGTGTAGTTGAAGCTGCNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGGTGATATGGAGATGGTGTTGAAGCTTGGGCTGGCTTGTTGTCATCCTGAGCCAAATAGGAGGCCGACTATGAAGGAAGTTGTTGCCCTTCTTCTTGGCGAGGATGTTGCGGATGCGCCAGGGAAAGTTTTGTCTGATTTGGCTCGCGGTGATGATAATGGTGGTGGTGGCGGGGAATCGGATGAGGAGG 964 0.4139 MEYWPHRFSYEELCIATKDFHNEKLIGSGGFGRVYKGTLMNKTLIAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMKGWCRXXXXXXXXXDYMPNGSLNKWVFDKPDKVLGWNQRRRILVDVAEGLNYLHHGWNQVVIHRDIKSSNILLDADMRGRLGDFGLAKLYQHGQVPNTTRVVGTIGYLAPEIANVAAPTSASDVYSFGVVLLEVACGRRPLEAMVVDEEVVLIDWVRELYARGCVVEAAXXXXXXXXXXGDMEMVLKLGLACCHPEPNRRPTMKEVVALLLGEDVADAPGKVLSDLARGDDNGGGGGESDEE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45776g00001 321 PIRSF ILK 5 291 - -
Trme45776g00001 321 MobiDBLite consensus disorder prediction 301 321 - -
Trme45776g00001 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Trme45776g00001 321 Pfam Protein kinase domain 20 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45776g00001 321 ProSitePatterns Protein kinases ATP-binding region signature. 26 48 IPR017441 GO:0005524
Trme45776g00001 321 Gene3D Transferase(Phosphotransferase) domain 1 96 297 - -
Trme45776g00001 321 SUPERFAMILY Protein kinase-like (PK-like) 4 289 IPR011009 -
Trme45776g00001 321 ProSiteProfiles Protein kinase domain profile. 20 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45776g00001 321 FunFam L-type lectin-domain containing receptor kinase S.4 96 300 - -
Trme45776g00001 321 PANTHER - 5 291 - -
Trme45776g00001 321 Gene3D Phosphorylase Kinase; domain 1 5 90 - -
Trme45776g00001 321 SMART serkin_6 20 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45776g00001 Trme-Chr45776 1 964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45776g00001 3 296 Receptor kinase-like Gene Family AT1G15530 67.458 9.27e-147 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme45776g00001 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45776g00001 - - gmx:100816035 511.146