Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45769g00001 GCTTTGGCATGCTTAATTGGCATTGCCCTCTGCTGTTGTTTACCCTGTATTATTGGCATTCTATATGCTGTTGCGGGACAGGAGGGTGCATCTGAATCAGATCTCAGTATACTTCCAAAATACAGGTTTCAGGCAGTAAGCAATGAAGAAACACCTGATCCAAGAGGTGGATCAATGGTTCCCATTGAAAATAGCAGTGGTGCAAATGAACGAGTACTTTCACCTGAGGATGCGGAATGTTGTATATGCATCTCTTCCTATGAGGATGGAGCAGAACTTCACGCTCTTCCTTGTAACCACCATTTCCACTCCACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAATACAATATTCTTAAGGGAAATGAACAG 390 0.4231 ALACLIGIALCCCLPCIIGILYAVAGQEGASESDLSILPKYRFQAVSNEETPDPRGGSMVPIENSSGANERVLSPEDAECCICISSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQ 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45769g00001 130 SUPERFAMILY RING/U-box 70 125 - -
Trme45769g00001 130 SMART ring_2 80 120 IPR001841 -
Trme45769g00001 130 Pfam Ring finger domain 79 121 IPR001841 -
Trme45769g00001 130 ProSiteProfiles Zinc finger RING-type profile. 80 121 IPR001841 -
Trme45769g00001 130 FunFam E3 ubiquitin protein ligase RIE1 60 128 - -
Trme45769g00001 130 CDD RING-H2_PA-TM-RING 79 121 - -
Trme45769g00001 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 128 IPR013083 -
Trme45769g00001 130 PANTHER TARGET OF ERK KINASE MPK-1 20 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45769g00001 Trme-Chr45769 248 993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45769g00001 1 130 C3H Transcription Factor Family AT1G68070 77.273 1.74e-72 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45769g00001 - K13148 gmx:100797651 228.024