Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme457452g00001 ATGATATCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGATATGGGTACTCAAGTTAGGCATGAAGCTGTGATGGATATTCAGAGAAGTTTGAATAAGCTTCATCAGGTTTTTCTTGATATGGCTATTTTGGTTGAGACTCAAGGAGAAAAAATTGACAACATTGAGGATAATGTGGCCAATGCTG 199 0.3869 MISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKIDNIEDNVANA 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme457452g00001 66 Gene3D - 20 66 - -
Trme457452g00001 66 Pfam Syntaxin 22 53 IPR006011 GO:0016020
Trme457452g00001 66 CDD SNARE_syntaxin1-like 22 66 - -
Trme457452g00001 66 SUPERFAMILY t-snare proteins 21 66 IPR010989 GO:0016020|GO:0016192
Trme457452g00001 66 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 18 66 IPR000727 -
Trme457452g00001 66 PANTHER SYNTAXIN 19 66 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme457452g00001 Trme-Chr457452 16 214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme457452g00001 1 66 SNARE and Associated Proteins AT2G18260 62.857 4.56e-22 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme457452g00001 K08486 - gmx:112997615 126.331