Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme456843g00001 ATGCTTCCATTGACCGTCCAGTCCGCAGTTGAGCTTGGTATCTTCGACATCTTAGCCAAAGAAGGAAAAGATGCCAAGCTCTCTGCAAACGATATTGCAGTTAAGATTGGATCAAAAAATCCAGAAGTACCCACAATGTTGAACCGTCTTTTAAG 155 0.4258 MLPLTVQSAVELGIFDILAKEGKDAKLSANDIAVKIGSKNPEVPTMLNRLL 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme456843g00001 51 Gene3D - 1 51 IPR036388 -
Trme456843g00001 51 Pfam Dimerisation domain 6 51 IPR012967 GO:0046983
Trme456843g00001 51 SUPERFAMILY "Winged helix" DNA-binding domain 2 51 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme456843g00001 Trme-Chr456843 37 191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme456843g00001 1 51 Monolignol Biosynthesis Gene Families AT5G54160 45.098 6.04e-09 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme456843g00001 K13066 - lja:Lj0g3v0153099.1 72.7886