Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme456418g00001 GGGGATTTTGGATTGGCTCTTATGCATGAGCATCATGGACAAGTGGCTAGCACAACGAAAGTACTAGGAACATTAGGATACATTGCTCCAGAAGTGATTCGGACAGGAAGAGCGTCGACTATGTCTGATGTGTTTGGTTTTGGAATTTTGGTATTGGAAGTAATTTGCGGGCGAAGACCTATTGAAGAGCATAAACAAGGACTAATAGAATGGGTTGAGTCCCTAATGGTGCTTGGCCAATTGCACAATGCTGTTGATGAAAGGTTGAAGGCTAAAGGAGGATACCCTATT 291 0.433 GDFGLALMHEHHGQVASTTKVLGTLGYIAPEVIRTGRASTMSDVFGFGILVLEVICGRRPIEEHKQGLIEWVESLMVLGQLHNAVDERLKAKGGYPI 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme456418g00001 97 Gene3D Transferase(Phosphotransferase) domain 1 1 95 - -
Trme456418g00001 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme456418g00001 97 PANTHER - 1 90 - -
Trme456418g00001 97 Pfam Protein kinase domain 2 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme456418g00001 97 SUPERFAMILY Protein kinase-like (PK-like) 1 65 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme456418g00001 Trme-Chr456418 1 291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme456418g00001 1 76 Receptor kinase-like Gene Family AT4G04960 64.474 8.12e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme456418g00001 Pkinase 6.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme456418g00001 - - gmx:100804553 168.318