Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45596g00001 GGTAGAGATATCATTGCTCGTGCCAAGACTGGGACTGGAAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCATTGAGNATGAACAAAGCAATACGAGGCGGTTTGGTCGGCTTCCTAAAGTATTAGTTCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATCTAAACACGGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAAAAGAATGCGCTTTCACGTGGTGTTGATGTAGTGGTTGGAACACCTGGGAGACTAATTGACCTGATAAATGGGAGAAGCCTACANNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCTGTTGGGTTTGAGGAGGATGTGGAATCAATTTTAGAAACGATCCCGTCTCAGAGGCAGATAATGCTTTTCTCTGCAACCATGCCAG 463 0.3823 GRDIIARAKTGTGKTLAFGIPIIKGLIEXEQSNTRRFGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQKNALSRGVDVVVGTPGRLIDLINGRSLXXXXXXXXXXXXXXXXXAVGFEEDVESILETIPSQRQIMLFSATMP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45596g00001 154 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 154 IPR014001 -
Trme45596g00001 154 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 154 - -
Trme45596g00001 154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 154 IPR027417 -
Trme45596g00001 154 SMART ultradead3 2 153 IPR014001 -
Trme45596g00001 154 Pfam DEAD/DEAH box helicase 1 154 IPR011545 GO:0003676|GO:0005524
Trme45596g00001 154 CDD DEADc 1 154 - -
Trme45596g00001 154 Gene3D - 1 154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45596g00001 Trme-Chr45596 63 616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45596g00001 1 154 Eukaryotic Initiation Factors Gene Family AT1G72730 37.975 2.98e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45596g00001 - K16911 tpra:123902197 256.529