Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45543g00001 ATGTGGGATCAGAAGACTGGTCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGCAAGTGGCTTGGAAGCAGACAAATTCGCTGCAATTGGGCAACAAAAGGTGCTGGAGGCATGGAAGAGAAGCAAACCCCAGACAACAAAAGTGTGGTGGAACTAACAAATGGTTCATCTG 214 0.4533 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGMEEKQTPDNKSVVELTNGSS 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45543g00001 71 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 56 - -
Trme45543g00001 71 MobiDBLite consensus disorder prediction 48 71 - -
Trme45543g00001 71 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Trme45543g00001 71 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Trme45543g00001 71 Gene3D - 1 61 IPR012677 -
Trme45543g00001 71 SUPERFAMILY RNA-binding domain, RBD 1 53 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45543g00001 Trme-Chr45543 72 688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45543g00001 3 46 Eukaryotic Initiation Factors Gene Family AT3G11400 59.091 6.77e-11 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45543g00001 K13201 - egr:104422971 139.043