Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45476g00001 ATGAACTCGTCAAAGTGGTACTGCCCTTCTTGTTTATGCCAAGCTTGCCTGACCAATCAAGATGACGATCGGATTGTCCTCTGTGATGGCTGCGATCATGGATATCACATCTATTGCATGAAACCTCCAAAAGTTTCTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAGTAACAAGCTAAGAACTGGTGAATATGTTTCAAAGACAAATGCTAACAACGAAAACAATTGCAACAATAAATCTGTAGAAGAATTGGATAGTGTTGGAGGAATGGACATGCTATTAACTGCAGCCAATTGTCTTAATTTCGAAGATAATTTGTCCGAAACCCAGTTTGAGTAG 390 0.4 MNSSKWYCPSCLCQACLTNQDDDRIVLCDGCDHGYHIYCMKPPKVSIPQGKWFCRKCDAGIKAISQAKKAYESNKLRTGEYVSKTNANNENNCNNKSVEELDSVGGMDMLLTAANCLNFEDNLSETQFE 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45476g00001 129 PANTHER OS02G0192300 PROTEIN 3 72 - -
Trme45476g00001 129 SUPERFAMILY FYVE/PHD zinc finger 13 60 IPR011011 -
Trme45476g00001 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 59 IPR013083 -
Trme45476g00001 129 Pfam PHD-finger 13 58 IPR019787 -
Trme45476g00001 129 ProSitePatterns Zinc finger PHD-type signature. 8 57 IPR019786 -
Trme45476g00001 129 SMART PHD_3 12 58 IPR001965 -
Trme45476g00001 129 ProSiteProfiles Zinc finger PHD-type profile. 10 60 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45476g00001 12 79 C2H2 Transcription Factor Family AT3G01460 38.235 4.73e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme45476g00001 PHD 1.1e-13 CL0390