Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45472g00001 CTCCCAACGGTTGATAGAGGCTTAACAGAGTTTAACAGACAGAGTACATGGTTACATGGAGACAGAAGCAATTATGGGTCAATTCGATCAACACCAAGAACTCCGTTGAATCAAGACAGTGGTCAATTTGGGCGAGGGTATGGTTCTTATGGTGGCTCGGATTGCTCATCAAGGATGATGAAGTGTCTTTGTAGCTTTGGTGGTAGAATATTACCAAGGCCAAGTGATGGAAAACTAAGGTATGTGGGTGGTCAGACACGTATTCTTCGTCTGAGAAAAGACATATCTTGGCCGGAGCTTAGGCAGAGAGCATTGTTAATCTACAACCTGGTTCATATACTAAAGTATCAACTTCCTGGGGAAGATCTGGATGCTTTGGTATCTGTATCATCTGATGAGGATTTACAGAATATGATGGAGGAGTATAATCTTATAGAAGATAGAGACCCCCCACAAAAGCTTAGGATTTTTTTGTTTTCAATGAGTGATTTAAAAGATGCTCAGTTTGCTCTTAGCAGCATTGGTGATGATTCTGAGTTCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAACAACTCAACCCCACTTGGTGTCAGCATTTCAGCCAATGGTATACGTGAATTTGACAAAAAAGCTATCGAAAGGGAGACTAGTAATGTTGCTGTAGAATCTATAGGTGTCAGGAATGCTCCCTTGACTAACAAGTCTGACACTCCATTGGCTACCAAGTCTTCACAGCAAGTATTACCGACGTCTATAGGTGTCCGGAATGCTCCATCGACTAACAAATCTGACATTCCATTGGATACCCGGTCTTCACAGCAAGTATTACCGACGTCTATAGGTGACAGGAGTGCTCACTTGACTAATAAATCTGACACTCCATTGGATGCCCACTTTTCGCAGCAAGTATTACCGACGTCTATAGGTGTTAGGAGTGCTCCCTTGACCAACAAATCTGACACTCCATTGGATACCCAGTC 995 0.4281 LPTVDRGLTEFNRQSTWLHGDRSNYGSIRSTPRTPLNQDSGQFGRGYGSYGGSDCSSRMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWPELRQRALLIYNLVHILKYQLPGEDLDALVSVSSDEDLQNMMEEYNLIEDRDPPQKLRIFLFSMSDLKDAQFALSSIGDDSEFQYVVAVNGMDLGSRNNSTPLGVSISANGIREFDKKAIERETSNVAVESIGVRNAPLTNKSDTPLATKSSQQVLPTSIGVRNAPSTNKSDIPLDTRSSQQVLPTSIGDRSAHLTNKSDTPLDAHFSQQVLPTSIGVRSAPLTNKSDTPLDTQS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45472g00001 332 MobiDBLite consensus disorder prediction 313 332 - -
Trme45472g00001 332 MobiDBLite consensus disorder prediction 22 45 - -
Trme45472g00001 332 CDD PB1_UP2 63 159 - -
Trme45472g00001 332 MobiDBLite consensus disorder prediction 234 281 - -
Trme45472g00001 332 Gene3D - 78 161 - -
Trme45472g00001 332 PANTHER OS05G0427100 PROTEIN-RELATED 51 290 - -
Trme45472g00001 332 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 79 161 - -
Trme45472g00001 332 MobiDBLite consensus disorder prediction 22 44 - -
Trme45472g00001 332 SUPERFAMILY CAD & PB1 domains 75 164 - -
Trme45472g00001 332 Pfam PB1 domain 76 159 IPR000270 GO:0005515
Trme45472g00001 332 SMART PB1_new 74 161 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45472g00001 Trme-Chr45472 3 997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45472g00001 3 256 MAP Kinase Kinase Kinase AT1G79570 48.649 4.10e-67 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45472g00001 - - tpra:123895538 628.632