Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45456g00001 ATGAAGGGATATGATGGTTTAGCGGCTTATCTTTCTGAAAAGTGTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGATACCACCACAAATGATCCAGTAAATCTTGAGAACCTTACCGAGGACCAGATGCACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCGCTGAAATTGCGATATCAGTCGGTTCAATTTCTTAGCCCAGAGGAGGAAGCGCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCGATGGCAGCCGCTGCTCGGATCCAGTATAAATTCCGTTCTTGGAAGCTGCGTAGAGAGTTTCTCAACATGCGACGTCAGGCTATTAAAATTCAAGCTGCATTTAGGGGATTTCAAATGCGTAGGGATTACCGTAAGATTCTATGGTCGGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTTGAGGTGAATCCCGACGAAGACATGAAAGATGAGAAGCAGGAAAGCGATGTAGAGGAGGACTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGATCTGTGATACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAG 750 0.4547 MKGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLDTTTNDPVNLENLTEDQMHLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFLSPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYKFRSWKLRREFLNMRRQAIKIQAAFRGFQMRRDYRKILWSVGILEKVILRWRLKRKGFRGLEVNPDEDMKDEKQESDVEEDFFKTGRKQAEERVERSVIRVQAMFRSKKAQQEYSRMKMAHSQAK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45456g00001 250 Gene3D - 118 163 - -
Trme45456g00001 250 Gene3D - 62 117 - -
Trme45456g00001 250 ProSiteProfiles IQ motif profile. 116 145 IPR000048 GO:0005515
Trme45456g00001 250 ProSiteProfiles IQ motif profile. 220 248 IPR000048 GO:0005515
Trme45456g00001 250 Pfam IQ calmodulin-binding motif 220 239 IPR000048 GO:0005515
Trme45456g00001 250 Pfam IQ calmodulin-binding motif 141 160 IPR000048 GO:0005515
Trme45456g00001 250 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Trme45456g00001 250 ProSiteProfiles IQ motif profile. 63 92 IPR000048 GO:0005515
Trme45456g00001 250 SMART iq_5 218 240 IPR000048 GO:0005515
Trme45456g00001 250 SMART iq_5 96 118 IPR000048 GO:0005515
Trme45456g00001 250 SMART iq_5 138 160 IPR000048 GO:0005515
Trme45456g00001 250 SMART iq_5 62 84 IPR000048 GO:0005515
Trme45456g00001 250 FunFam Calmodulin-binding transcription activator 2 115 163 - -
Trme45456g00001 250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 164 IPR027417 -
Trme45456g00001 250 ProSiteProfiles IQ motif profile. 139 163 IPR000048 GO:0005515
Trme45456g00001 250 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45456g00001 Trme-Chr45456 105 970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45456g00001 2 250 CAMTA Transcription Factor Family AT3G16940 64.000 1.12e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45456g00001 K21596 - gmx:100819198 385.571