Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4541g00001 GTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTGGAGTTTTTGTCGATGAAGCTCGAAGCAGTAAATTCAAGATTGAACACCGGCATTGAAGCCTTTCCTCCAAAAGATTCCTATTTGGCTGTAGAGGATAAAGATACTCAAGAGGATCTATAG 186 0.3925 VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDSYLAVEDKDTQEDL 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4541g00001 61 Coils Coil 15 35 - -
Trme4541g00001 61 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 48 IPR024097 GO:0006355
Trme4541g00001 61 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 36 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4541g00001 Trme-Chr4541 69 813 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4541g00001 1 47 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 91.489 1.54e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4541g00001 - - gmx:100784478 91.2781