Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45401g00002 ATGCTGCATGAAGACCCTGGAAATGTTAGTTACTCTGCAGTTGGAGGGCTTTCAGATCAGATTCGAGAACTAAGGGAATCAATTGAATTGCCTCTAATGAATCCTGAGCTTTTTCTTAGGGTTGGAATCAAACCACCCAAGGGTGTTCTTCTTTATGGACCTCCTGGAACTGGGAAAACATTATTAGCGAGAGCAATTGCAAGCAATATTGATGCTAACTTCTTGAAGGTTGTATTTTGTTCTTTGTTCTTTGTGCTCTGCGCTCCTAGTGCTTGA 276 0.4167 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVFCSLFFVLCAPSA 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45401g00002 91 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 1 81 - -
Trme45401g00002 91 FunFam Cell division control protein 48 homolog E 10 83 - -
Trme45401g00002 91 Gene3D - 8 82 IPR027417 -
Trme45401g00002 91 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 77 IPR027417 -
Trme45401g00002 91 Pfam ATPase family associated with various cellular activities (AAA) 49 82 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45401g00002 Trme-Chr45401 489 845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45401g00002 9 83 Calmodulin-binding Proteins AT3G56690 44.000 4.04e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45401g00002 K03064 - apan:127260936 156.762