Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45399g00001 TGCCCGACAACTCTGAAAAGGATATGCCGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCCGTTGAGGGAGTTGAAGGTGGGTTGAAGTTTGATCCTTCCGTGGGGGCTTTTGTGGCAAAAGGGACAGCCATCCAAGAAATTGATGAAAATAGAAGCCTCCCTTTCCCCGAGAAAAGTACTACAGAAGACTCTGAGCCTTTTTCACAAGATGCTGCCTCAGTGCCTCCTGCACATTGTAGTGACGGTGAGAATTCAGCAAATAAGTTGGATGGGAAATTGAAGGANACCAATGCATCTTTGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGGATGATTGTCCTGAACAAGCTTGTTTTGGTTCCGTTCTTGGAAAAGGTGATGAGTGGGTTCTGAACAAGGGTAGTTTGAGAGAAGAAGAAAAATGTAAACATAATACTATTGGCCATAGGACAAGTTCCTTTGTTGGTTATGAGATGGACACTGGTGTGGATGGTGATGATGA 563 0.4281 CPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVEGVEGGLKFDPSVGAFVAKGTAIQEIDENRSLPFPEKSTTEDSEPFSQDAASVPPAHCSDGENSANKLDGKLKXTNASLIDCSEDSKSFAMDDCPEQACFGSVLGKGDEWVLNKGSLREEEKCKHNTIGHRTSSFVGYEMDTGVDGDD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45399g00001 187 PANTHER PROTEIN NLP8 1 123 IPR045012 GO:0003700
Trme45399g00001 187 MobiDBLite consensus disorder prediction 66 108 - -
Trme45399g00001 187 Pfam RWP-RK domain 1 25 IPR003035 -
Trme45399g00001 187 ProSiteProfiles RWP-RK domain profile. 1 45 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45399g00001 Trme-Chr45399 1 563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45399g00001 1 108 NLP Transcription Factor Family AT3G59580 56.481 8.13e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trme45399g00001 RWP-RK 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45399g00001 - - gmx:100804426 233.802