Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45395g00001 ATGGATCGGATCAAAGGTCCATGGAGTCCTGAAGAAGACGAAGCACTTCAAAAGCTTGTTGAAAAGCACGGTCCGAGAAACTGGTCGATTATAAGTAAATCGATTCCAGGCCGGTCTGGGAAATCGTGCAGGCTTCGTTGGTGTAATCAGCTTTCACCACAAGTTGAGCATCGGGCTTTTACTCCCGAAGAAGATGATACTATTATCAGAGCCCATGCTCGATTTGGAAATAAATGGGCCACCATTGCTAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAAAATCACTGGAACTCTACTTTGAAACGTAAGTGTTGTTCTAGTATGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNCTTCACCTGGTTCTCCTTCTGGATCCGATGTGAGCGAGTCCAGCGTACCTATCGTGAACTCCTCTCATGTTTACCGTCCGGTGCCGACGAGGACAGTTACGCTTCCGGTTCCTGTTACGGTTCTACCTCCTGTAGAAACGACATCGTCTTCTAAATCTTCAAAATCATCAAAATCAAATGATCCTCCAACTTCATTATCACTTTCACTTCCCGGAGTCGATTCTTCGTCGGAAGATTCAAACCGCGTGACTGAGCCTCCTGTGAAGAACTCTGCTCCACCGACTCCTCCACCACCA 711 0.4121 MDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGSPSGSDVSESSVPIVNSSHVYRPVPTRTVTLPVPVTVLPPVETTSSSKSSKSSKSNDPPTSLSLSLPGVDSSSEDSNRVTEPPVKNSAPPTPPPP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45395g00001 237 Gene3D - 58 117 - -
Trme45395g00001 237 Gene3D - 4 56 - -
Trme45395g00001 237 MobiDBLite consensus disorder prediction 181 226 - -
Trme45395g00001 237 CDD SANT 7 49 IPR001005 -
Trme45395g00001 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Trme45395g00001 237 SMART sant 56 104 IPR001005 -
Trme45395g00001 237 SMART sant 4 53 IPR001005 -
Trme45395g00001 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Trme45395g00001 237 FunFam MYB transcription factor 5 56 - -
Trme45395g00001 237 FunFam Transcription factor MYB44 59 105 - -
Trme45395g00001 237 CDD SANT 59 102 IPR001005 -
Trme45395g00001 237 MobiDBLite consensus disorder prediction 181 237 - -
Trme45395g00001 237 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Trme45395g00001 237 Coils Coil 110 110 - -
Trme45395g00001 237 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Trme45395g00001 237 PANTHER MYB PROTEIN-RELATED 5 197 - -
Trme45395g00001 237 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Trme45395g00001 237 MobiDBLite consensus disorder prediction 130 153 - -
Trme45395g00001 237 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Trme45395g00001 237 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45395g00001 Trme-Chr45395 287 997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45395g00001 1 224 MYB Transcription Factor Family AT4G37260 56.034 1.67e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme45395g00001 Myb_DNA-bind_6 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45395g00001 K09422 - gmx:780556 283.493