Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45387g00001 CGGCTCGGCTATGATAGACCGAGTAAAGCTGTTGATTGGCTTATCAAAAAGGCGAAATCGGCTATTGATAAGCTTGATCAACTTCCTCCATGGAATCCAATTCCTAATGCAACAGAAGAGGAAGGGACTAATAATAATGTAGTAGAAACAAATGAAATGGTTATTGCAGCAGAAAATTCAGAATCTTCTGGTTACAATATGCAGCAGAATAATCACAATCACCATAACCATTCAGCTTTTATTCAATCAACTATTGATAATGATGCTATAGCATTTTTTCCAACAAGTTCTGTTGCTGAAACTATGAATTTTCAAAGCTATTCTTCTGATATAATCTCAAGAACAAACAACTCAACACAGGATCTTGGTCTTTCTCTTCATTCATTTCAAGACAATTCAGCTACAAATGATCAAACACTTTTCTCTGAATCAAACCCTGTTGGATTTGATGCTAATTATCATAGGATTGTGAATTGGAACAATGATCATGGAACAACTGATATGAATAGAACTGGTTTCATGGTTAATTCGCCTGCGTTTTTAGGCCAAG 550 0.3545 RLGYDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEEEGTNNNVVETNEMVIAAENSESSGYNMQQNNHNHHNHSAFIQSTIDNDAIAFFPTSSVAETMNFQSYSSDIISRTNNSTQDLGLSLHSFQDNSATNDQTLFSESNPVGFDANYHRIVNWNNDHGTTDMNRTGFMVNSPAFLGQ 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45387g00001 183 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 171 IPR005333 GO:0003700
Trme45387g00001 183 ProSiteProfiles TCP domain profile. 1 25 IPR017887 -
Trme45387g00001 183 Pfam TCP family transcription factor 1 77 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45387g00001 Trme-Chr45387 64 613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45387g00001 1 161 TCP Transcription Factor Family AT3G15030 33.645 3.09e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trme45387g00001 TCP 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45387g00001 - - gmx:100814907 224.557