Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45311g00001 AGAACAATGGAATCTAAGATGGATCAGTATGAGATCATGGAACAGATCGGTCGTGGTGCTTTTGGTGCTGCTATTCTTGTTAATCATAAAGCTGAGAAGAAAAAATATGTGTTGAAGAAAATCAGGCTTGCTAGACAGACTGAGAGATGTAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCAAGAATCAAGCACCCTTACATTGTGGAATTTAAGGAAGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGTGA 288 0.4132 RTMESKMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDM 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45311g00001 95 Pfam Protein kinase domain 10 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45311g00001 95 ProSiteProfiles Protein kinase domain profile. 10 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme45311g00001 95 FunFam Serine/threonine-protein kinase Nek2 7 89 - -
Trme45311g00001 95 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Trme45311g00001 95 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 95 - -
Trme45311g00001 95 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Trme45311g00001 95 SUPERFAMILY Protein kinase-like (PK-like) 7 95 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45311g00001 Trme-Chr45311 1 898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45311g00001 7 74 Core Cell Cycle Gene Families AT3G48750 35.294 1.49e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme45311g00001 Pkinase 3.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45311g00001 K08857 - psat:127119140 193.741