Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45279g00001 ATGGATGCAGGACTTCCTAAGCTTCTCGCAGACGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCCGCCATGGGATACCTAGCTCCTGAATACATTACTACAGGACGCTTTACCGAGAAGAGTGACATATACGCATTTGGAGTTATCGTACTTCAAGTTTTATCTGGCAAGACAGCAATCGGCGGTTCAATACGGACGGCATTCGAGTCTTTCAGATTTGACGATTGCATCGACACAAATCTTAAGGGAAGATATTCTAGTTCTGAAGCAACGACACTTACAAAGCTTGCAGTACAGTGTATCCATGAGAGTCCTGACCAAAGACCAAGCATGGTGGATGTGATTCAGGAGCTAAGGGTGTTTCCGGCTAATTCATAA 378 0.4418 MDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESFRFDDCIDTNLKGRYSSSEATTLTKLAVQCIHESPDQRPSMVDVIQELRVFPANS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45279g00001 125 Pfam Protein tyrosine and serine/threonine kinase 2 118 IPR001245 GO:0004672|GO:0006468
Trme45279g00001 125 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 119 - -
Trme45279g00001 125 SUPERFAMILY Protein kinase-like (PK-like) 2 120 IPR011009 -
Trme45279g00001 125 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Trme45279g00001 125 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45279g00001 Trme-Chr45279 556 933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45279g00001 2 120 Receptor kinase-like Gene Family AT3G56370 37.879 2.53e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trme45279g00001 PK_Tyr_Ser-Thr 2.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45279g00001 - - gmx:100777169 210.69