Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45212g00001 ATGCACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGAGGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCACTCGCTGAAATTGCGATATCAGTCGGTTCAATTTCTTAGCCCAGAGGAGGAAGCGCGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCGATGGCAGCCGCTGCTCGGATCCAGTATAAATTCCGTTCTTGGAAGCTGCGTAGAGAGTTTCTCAACATGCGACGTCAGGCTATTAAAATTCAAGCTGCATTTAGGGGATTTCAAATGCGTAGGGATTACCGTAAGATTCTATGGTCGGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTTGAGGTGAATCCCGACGAAGACATGAAAGATGAGAAGCAGGAAAGCGATGTAGAGGAGGACTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGATCTGTGATACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCGCAACAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGCAAAG 600 0.4617 MHLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFLSPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYKFRSWKLRREFLNMRRQAIKIQAAFRGFQMRRDYRKILWSVGILEKVILRWRLKRKGFRGLEVNPDEDMKDEKQESDVEEDFFKTGRKQAEERVERSVIRVQAMFRSKKAQQEYSRMKMAHSQAK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45212g00001 200 FunFam Calmodulin-binding transcription activator 2 65 113 - -
Trme45212g00001 200 Pfam IQ calmodulin-binding motif 68 86 IPR000048 GO:0005515
Trme45212g00001 200 Pfam IQ calmodulin-binding motif 170 189 IPR000048 GO:0005515
Trme45212g00001 200 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Trme45212g00001 200 Gene3D - 69 113 - -
Trme45212g00001 200 Gene3D - 12 68 - -
Trme45212g00001 200 ProSiteProfiles IQ motif profile. 89 113 IPR000048 GO:0005515
Trme45212g00001 200 SMART iq_5 12 34 IPR000048 GO:0005515
Trme45212g00001 200 SMART iq_5 168 190 IPR000048 GO:0005515
Trme45212g00001 200 SMART iq_5 46 68 IPR000048 GO:0005515
Trme45212g00001 200 SMART iq_5 88 110 IPR000048 GO:0005515
Trme45212g00001 200 ProSiteProfiles IQ motif profile. 170 198 IPR000048 GO:0005515
Trme45212g00001 200 ProSiteProfiles IQ motif profile. 66 95 IPR000048 GO:0005515
Trme45212g00001 200 ProSiteProfiles IQ motif profile. 13 42 IPR000048 GO:0005515
Trme45212g00001 200 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45212g00001 Trme-Chr45212 262 977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45212g00001 3 200 CAMTA Transcription Factor Family AT3G16940 66.332 1.92e-75 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45212g00001 K21596 - gmx:100819198 305.449