Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4513g00001 ATGCCTGGTTCAGCTGGGGTTGGATTCACTCCACATGTCGTCCATGTTGCAATTGGTGAAGACATTTCAGCAAAAGTCATAGCATTGTCTCAGGTGCACGCTAGGGCTTTATGTGTCCTTTCCGGTTTTGGCAGTGTCTCAGCTGTCACACTTGGCTCTTTGTTGCCAACTGAGAATGGCAGCATACGGGACCGAGCTGGTGGGATAAGTGTTATGCTTTCTAGTCCTGAAGGCCGCGTATTTGGTGGAAGAGTTGCTGGGCAGCTAATTGCTTCAGCTCCTACCAAG 288 0.5 MPGSAGVGFTPHVVHVAIGEDISAKVIALSQVHARALCVLSGFGSVSAVTLGSLLPTENGSIRDRAGGISVMLSSPEGRVFGGRVAGQLIASAPTK 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4513g00001 96 CDD DUF296 10 93 IPR005175 -
Trme4513g00001 96 Gene3D - 11 96 - -
Trme4513g00001 96 Pfam Plants and Prokaryotes Conserved (PCC) domain 11 94 IPR005175 -
Trme4513g00001 96 SUPERFAMILY AF0104/ALDC/Ptd012-like 9 94 - -
Trme4513g00001 96 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 51 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4513g00001 Trme-Chr4513 396 2133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4513g00001 1 96 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 44.915 5.74e-25 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4513g00001 - - gmx:100802542 108.997