Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme45130g00001 AATGAATACTTTAAGCAGCAGAAGTATCCCGAAGCTATTAAGCATTACACCGAGTCTATTAAAAGAAACCCGAATAATCCAAAAGCTTATTTTAACAGAGCAAAATGTTACATAAAACTGGGGGAATTGCCTGAAGGTTTAAAGGATGCAGAGAAGTGCATTGAGCTTGATCCGACCTTCACCGAGGGTTATACCTGGAAGGCTGTGGTTCAGTTTTTCATGAAACAATATGAAAAAGCATATAAGGAAGGTTTGAAACATGACACAAACAAAACGTCTTTGCTTTATGGGGTTCAAAGGTGTGTACTGCAAATTAATAGAATCATTCATGTTTCCCTTTTTGGGCATTTGGACAATTCAGTCCTTAAGGCTCTTAAACCCATTAGCCACATTGCCAGGTTCTTTCCTCTCTCTCTCTCACCCTCTTAA 429 0.3869 NEYFKQQKYPEAIKHYTESIKRNPNNPKAYFNRAKCYIKLGELPEGLKDAEKCIELDPTFTEGYTWKAVVQFFMKQYEKAYKEGLKHDTNKTSLLYGVQRCVLQINRIIHVSLFGHLDNSVLKALKPISHIARFFPLSLSPS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme45130g00001 142 SMART tpr_5 1 26 IPR019734 GO:0005515
Trme45130g00001 142 SMART tpr_5 27 60 IPR019734 GO:0005515
Trme45130g00001 142 Pfam TPR repeat 1 41 - -
Trme45130g00001 142 PANTHER TPR REPEAT CONTAINING PROTEIN 1 106 - -
Trme45130g00001 142 Gene3D Tetratricopeptide repeat domain 1 104 IPR011990 GO:0005515
Trme45130g00001 142 ProSiteProfiles TPR repeat profile. 27 60 IPR019734 GO:0005515
Trme45130g00001 142 SUPERFAMILY TPR-like 1 102 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme45130g00001 Trme-Chr45130 208 818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme45130g00001 1 56 U-box Gene Family AT3G07370 37.500 2.64e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme45130g00001 K09553 - vvi:100854305 174.866